Wall clock time and date at job start Mon Mar 30 2020 02:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46060 * 118.52082 * 2 1 4 4 C 1.53119 * 109.91937 * 199.72092 * 3 2 1 5 5 C 1.53480 * 108.37693 * 312.04307 * 4 3 2 6 6 H 1.09002 * 109.77196 * 302.03279 * 5 4 3 7 7 C 1.50703 * 109.73651 * 181.36514 * 5 4 3 8 8 H 1.07998 * 119.99742 * 1.34629 * 7 5 4 9 9 C 1.37881 * 119.99912 * 181.34388 * 7 5 4 10 10 N 1.31508 * 119.99924 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 119.99793 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47353 * 59.99758 * 11 9 7 13 13 H 1.48495 * 109.47229 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46937 * 299.99996 * 11 9 7 15 15 O 1.45437 * 108.11214 * 61.70928 * 5 4 3 16 16 C 1.33734 * 118.52334 * 180.27440 * 2 1 3 17 17 O 1.21508 * 118.45511 * 357.42627 * 16 2 1 18 18 H 1.09004 * 109.47286 * 179.72938 * 1 2 3 19 19 H 1.09001 * 109.47468 * 299.72990 * 1 2 3 20 20 H 1.09006 * 109.47304 * 59.72547 * 1 2 3 21 21 H 1.09000 * 109.40238 * 319.85846 * 3 2 1 22 22 H 1.09002 * 109.39371 * 79.58787 * 3 2 1 23 23 H 1.08993 * 109.69753 * 192.30736 * 4 3 2 24 24 H 1.09003 * 109.69451 * 71.76788 * 4 3 2 25 25 H 0.97006 * 119.99770 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1623 1.2833 0.0000 4 6 3.6021 1.0947 -0.4858 5 6 4.2148 -0.0944 0.2668 6 1 4.1756 0.0891 1.3406 7 6 5.6459 -0.2869 -0.1645 8 1 6.0873 0.3844 -0.8862 9 6 6.3916 -1.3201 0.3623 10 7 5.8543 -2.1372 1.2415 11 14 8.1657 -1.5582 -0.1719 12 1 8.9507 -0.3426 0.1619 13 1 8.7428 -2.7292 0.5358 14 1 8.2142 -1.7917 -1.6376 15 8 3.4403 -1.2820 -0.0570 16 6 2.1035 -1.1750 -0.0056 17 8 1.4423 -2.1935 0.0375 18 1 -0.3634 -1.0277 -0.0049 19 1 -0.3634 0.5096 0.8924 20 1 -0.3634 0.5181 -0.8875 21 1 1.6447 1.9768 -0.6628 22 1 2.1719 1.6901 1.0112 23 1 4.1799 1.9959 -0.2812 24 1 3.6049 0.8920 -1.5568 25 1 6.3791 -2.8638 1.6124 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259956922.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:26 Heat of formation + Delta-G solvation = -81.240454 kcal Electronic energy + Delta-G solvation = -11638.538607 eV Core-core repulsion = 9424.226312 eV Total energy + Delta-G solvation = -2214.312295 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.79420 -36.19993 -35.14216 -32.79436 -31.00140 -27.57963 -25.71028 -23.70373 -21.80827 -18.41591 -17.47571 -16.60361 -15.90633 -15.26804 -14.60965 -14.07668 -13.72920 -12.98959 -12.85852 -12.26502 -12.08834 -11.73319 -11.10868 -11.00464 -10.72072 -10.56560 -10.33533 -9.94019 -9.06365 -8.94385 -8.62266 -8.24605 -6.22684 -4.41407 3.23022 3.29359 3.30806 3.48584 3.79969 4.26224 4.67400 5.25573 5.39425 5.44731 5.57952 5.74436 5.80331 6.08664 6.13288 6.26629 6.40998 6.85385 7.11196 7.41882 7.66758 7.89713 8.60947 9.01054 9.15677 9.33181 10.84068 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.070843 B = 0.012659 C = 0.011223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.144699 B = 2211.314447 C = 2494.293112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.635 5.635 3 C 0.112 3.888 4 C -0.162 4.162 5 C 0.214 3.786 6 H 0.043 0.957 7 C -0.540 4.540 8 H 0.074 0.926 9 C 0.079 3.921 10 N -0.849 5.849 11 Si 0.903 3.097 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.272 1.272 15 O -0.316 6.316 16 C 0.641 3.359 17 O -0.572 6.572 18 H 0.088 0.912 19 H 0.051 0.949 20 H 0.051 0.949 21 H 0.068 0.932 22 H 0.059 0.941 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 7.811 -1.646 9.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.383 5.383 3 C -0.011 4.011 4 C -0.200 4.200 5 C 0.162 3.838 6 H 0.061 0.939 7 C -0.576 4.576 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.483 5.483 11 Si 0.730 3.270 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.198 1.198 15 O -0.225 6.225 16 C 0.398 3.602 17 O -0.461 6.461 18 H 0.107 0.893 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.106 0.894 24 H 0.089 0.911 25 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.976 6.934 -1.540 8.673 hybrid contribution 0.807 0.122 -0.226 0.847 sum -4.169 7.056 -1.766 8.384 Atomic orbital electron populations 1.21525 0.79358 1.04147 1.00184 1.47182 1.07267 1.05901 1.77993 1.21532 0.93915 0.84776 1.00888 1.22569 0.93667 1.02056 1.01698 1.20769 0.89723 0.78236 0.95045 0.93885 1.20931 0.92671 1.15893 1.28150 0.90832 1.25194 0.99100 0.94984 0.93771 1.70023 1.36949 1.15189 1.26147 0.86483 0.83432 0.77911 0.79198 1.19780 1.20884 1.19753 1.87280 1.11915 1.42596 1.80697 1.18561 0.83585 0.82915 0.75164 1.90800 1.63263 1.34985 1.57056 0.89299 0.93009 0.93035 0.91396 0.92254 0.89365 0.91120 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.39 10.54 59.84 0.63 2.02 15 2 N -0.63 -12.41 3.23 -188.17 -0.61 -13.02 15 3 C 0.11 1.82 6.52 -4.22 -0.03 1.79 15 4 C -0.16 -3.08 5.51 -26.42 -0.15 -3.23 15 5 C 0.21 5.39 2.79 -27.63 -0.08 5.31 15 6 H 0.04 1.14 8.14 -51.93 -0.42 0.72 15 7 C -0.54 -14.53 8.82 -34.44 -0.30 -14.83 15 8 H 0.07 1.86 7.75 -52.49 -0.41 1.45 15 9 C 0.08 2.17 5.41 -17.82 -0.10 2.07 15 10 N -0.85 -25.05 12.85 55.43 0.71 -24.34 15 11 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 15 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 14 H -0.27 -6.20 7.11 56.52 0.40 -5.79 15 15 O -0.32 -8.88 9.58 -39.25 -0.38 -9.25 15 16 C 0.64 16.17 8.31 53.59 0.45 16.62 15 17 O -0.57 -15.77 16.18 -19.40 -0.31 -16.08 15 18 H 0.09 1.51 6.67 -51.93 -0.35 1.16 15 19 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 20 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 21 H 0.07 0.88 8.11 -51.93 -0.42 0.46 15 22 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 23 H 0.09 1.46 8.14 -51.93 -0.42 1.04 15 24 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 25 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 LS Contribution 220.30 15.07 3.32 3.32 Total: -1.00 -32.87 220.30 -4.71 -37.57 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -2.85 Total: -3.61 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 0.43 Total: 9.76 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.11 Total: -37.36 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.69 Total: -25.33 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -32.87 -4.71 -37.57 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259956922.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.666 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds