Wall clock time and date at job start Mon Mar 30 2020 02:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46060 * 118.52082 * 2 1 4 4 C 1.53119 * 109.91937 * 199.72092 * 3 2 1 5 5 C 1.53480 * 108.37693 * 312.04307 * 4 3 2 6 6 H 1.09002 * 109.77196 * 302.03279 * 5 4 3 7 7 C 1.50703 * 109.73651 * 181.36514 * 5 4 3 8 8 H 1.07998 * 119.99742 * 1.34629 * 7 5 4 9 9 C 1.37881 * 119.99912 * 181.34388 * 7 5 4 10 10 N 1.31508 * 119.99924 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 119.99793 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47353 * 59.99758 * 11 9 7 13 13 H 1.48495 * 109.47229 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46937 * 299.99996 * 11 9 7 15 15 O 1.45437 * 108.11214 * 61.70928 * 5 4 3 16 16 C 1.33734 * 118.52334 * 180.27440 * 2 1 3 17 17 O 1.21508 * 118.45511 * 357.42627 * 16 2 1 18 18 H 1.09004 * 109.47286 * 179.72938 * 1 2 3 19 19 H 1.09001 * 109.47468 * 299.72990 * 1 2 3 20 20 H 1.09006 * 109.47304 * 59.72547 * 1 2 3 21 21 H 1.09000 * 109.40238 * 319.85846 * 3 2 1 22 22 H 1.09002 * 109.39371 * 79.58787 * 3 2 1 23 23 H 1.08993 * 109.69753 * 192.30736 * 4 3 2 24 24 H 1.09003 * 109.69451 * 71.76788 * 4 3 2 25 25 H 0.97006 * 119.99770 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1623 1.2833 0.0000 4 6 3.6021 1.0947 -0.4858 5 6 4.2148 -0.0944 0.2668 6 1 4.1756 0.0891 1.3406 7 6 5.6459 -0.2869 -0.1645 8 1 6.0873 0.3844 -0.8862 9 6 6.3916 -1.3201 0.3623 10 7 5.8543 -2.1372 1.2415 11 14 8.1657 -1.5582 -0.1719 12 1 8.9507 -0.3426 0.1619 13 1 8.7428 -2.7292 0.5358 14 1 8.2142 -1.7917 -1.6376 15 8 3.4403 -1.2820 -0.0570 16 6 2.1035 -1.1750 -0.0056 17 8 1.4423 -2.1935 0.0375 18 1 -0.3634 -1.0277 -0.0049 19 1 -0.3634 0.5096 0.8924 20 1 -0.3634 0.5181 -0.8875 21 1 1.6447 1.9768 -0.6628 22 1 2.1719 1.6901 1.0112 23 1 4.1799 1.9959 -0.2812 24 1 3.6049 0.8920 -1.5568 25 1 6.3791 -2.8638 1.6124 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259956922.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:26 Heat of formation + Delta-G solvation = -105.078638 kcal Electronic energy + Delta-G solvation = -11639.572308 eV Core-core repulsion = 9424.226312 eV Total energy + Delta-G solvation = -2215.345996 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.59373 -38.13814 -36.80691 -34.85859 -32.69516 -29.29444 -27.24821 -25.47187 -23.62135 -20.17479 -19.35582 -18.40771 -17.63281 -17.03415 -16.50104 -15.79712 -15.37385 -14.74694 -14.58342 -13.71429 -13.47831 -13.42786 -12.79732 -12.65264 -12.47928 -12.41516 -12.09361 -11.87246 -11.04330 -10.81725 -10.66131 -9.74486 -8.29715 -6.55751 1.41548 1.44568 1.53663 1.83981 1.99727 2.34796 2.76719 3.39824 3.92311 4.06607 4.27437 4.38596 4.65381 4.66257 4.78899 4.85113 4.97350 5.30787 5.45815 5.60236 5.71685 5.93751 6.56685 7.14683 7.21998 7.31316 8.78111 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.070843 B = 0.012659 C = 0.011223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.144699 B = 2211.314447 C = 2494.293112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.626 5.626 3 C 0.110 3.890 4 C -0.151 4.151 5 C 0.202 3.798 6 H 0.017 0.983 7 C -0.557 4.557 8 H 0.088 0.912 9 C 0.019 3.981 10 N -0.899 5.899 11 Si 0.976 3.024 12 H -0.253 1.253 13 H -0.286 1.286 14 H -0.268 1.268 15 O -0.359 6.359 16 C 0.629 3.371 17 O -0.612 6.612 18 H 0.064 0.936 19 H 0.083 0.917 20 H 0.089 0.911 21 H 0.120 0.880 22 H 0.079 0.921 23 H 0.117 0.883 24 H 0.067 0.933 25 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.101 10.197 -2.509 11.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.373 5.373 3 C -0.012 4.012 4 C -0.189 4.189 5 C 0.150 3.850 6 H 0.035 0.965 7 C -0.593 4.593 8 H 0.106 0.894 9 C -0.185 4.185 10 N -0.535 5.535 11 Si 0.799 3.201 12 H -0.177 1.177 13 H -0.211 1.211 14 H -0.193 1.193 15 O -0.269 6.269 16 C 0.385 3.615 17 O -0.505 6.505 18 H 0.083 0.917 19 H 0.101 0.899 20 H 0.107 0.893 21 H 0.138 0.862 22 H 0.097 0.903 23 H 0.135 0.865 24 H 0.086 0.914 25 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.166 9.392 -2.410 10.987 hybrid contribution 0.784 -0.559 0.051 0.964 sum -4.382 8.833 -2.359 10.139 Atomic orbital electron populations 1.21831 0.76517 1.03700 1.03547 1.47303 1.09046 1.05195 1.75788 1.21832 0.92265 0.83754 1.03309 1.22460 0.95723 1.00195 1.00531 1.20858 0.89739 0.79886 0.94519 0.96532 1.21484 0.94048 1.15917 1.27852 0.89411 1.26217 1.03945 0.94709 0.93617 1.70187 1.38883 1.16226 1.28180 0.85350 0.77835 0.78310 0.78603 1.17705 1.21128 1.19318 1.87157 1.13957 1.44633 1.81148 1.18722 0.82720 0.84375 0.75659 1.90750 1.63635 1.36988 1.59126 0.91739 0.89853 0.89260 0.86233 0.90285 0.86516 0.91410 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.34 10.54 127.77 1.35 3.69 15 2 N -0.63 -23.13 3.23 -981.02 -3.16 -26.29 15 3 C 0.11 3.13 6.52 86.50 0.56 3.69 15 4 C -0.15 -5.38 5.51 30.80 0.17 -5.21 15 5 C 0.20 10.21 2.79 30.01 0.08 10.29 15 6 H 0.02 0.91 8.14 -2.39 -0.02 0.89 15 7 C -0.56 -30.01 8.82 25.60 0.23 -29.78 15 8 H 0.09 4.33 7.75 -2.91 -0.02 4.31 15 9 C 0.02 1.07 5.41 84.66 0.46 1.53 15 10 N -0.90 -54.86 12.85 21.45 0.28 -54.58 15 11 Si 0.98 42.62 29.54 68.60 2.03 44.65 15 12 H -0.25 -10.15 7.11 99.48 0.71 -9.45 15 13 H -0.29 -12.44 7.11 99.48 0.71 -11.74 15 14 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 15 O -0.36 -20.74 9.58 -51.08 -0.49 -21.23 15 16 C 0.63 32.12 8.31 129.95 1.08 33.20 15 17 O -0.61 -34.79 16.18 19.94 0.32 -34.47 15 18 H 0.06 2.12 6.67 -2.38 -0.02 2.10 15 19 H 0.08 1.79 8.14 -2.39 -0.02 1.77 15 20 H 0.09 1.81 8.14 -2.38 -0.02 1.80 15 21 H 0.12 2.31 8.11 -2.39 -0.02 2.29 15 22 H 0.08 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.12 3.45 8.14 -2.39 -0.02 3.43 15 24 H 0.07 2.45 8.14 -2.39 -0.02 2.43 15 25 H 0.27 15.42 8.31 -92.70 -0.77 14.64 15 Total: -1.00 -74.84 220.30 4.07 -70.76 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: 1.18 Total: 3.76 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 3.93 Total: 17.40 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -2.89 Total: -80.87 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -0.17 Total: -55.70 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -74.84 4.07 -70.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259956922.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.315 kcal (2) G-P(sol) polarization free energy of solvation -74.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds