Wall clock time and date at job start Mon Mar 30 2020 01:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99785 * 2 1 4 4 H 1.48500 * 109.47459 * 274.98822 * 3 2 1 5 5 H 1.48498 * 109.47312 * 34.98877 * 3 2 1 6 6 H 1.48501 * 109.47326 * 154.98938 * 3 2 1 7 7 C 1.37873 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99630 * 186.08192 * 7 2 1 9 9 C 1.50694 * 120.00578 * 6.08417 * 7 2 1 10 10 O 1.42906 * 110.53947 * 302.21404 * 9 7 2 11 11 C 1.54227 * 110.60851 * 179.36725 * 9 7 2 12 12 C 1.51317 * 103.55393 * 241.48033 * 11 9 7 13 13 O 1.21220 * 125.39497 * 179.73820 * 12 11 9 14 14 N 1.33877 * 109.20538 * 359.97438 * 12 11 9 15 15 C 1.33872 * 114.47633 * 0.02562 * 14 12 11 16 16 O 1.21226 * 125.39498 * 179.97438 * 15 14 12 17 17 H 0.96998 * 120.00168 * 359.97438 * 1 2 3 18 18 H 0.96701 * 113.99840 * 57.14738 * 10 9 7 19 19 H 1.08997 * 110.60444 * 122.96797 * 11 9 7 20 20 H 1.08992 * 110.60781 * 359.97438 * 11 9 7 21 21 H 0.97001 * 122.76260 * 179.97438 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3912 2.1074 -1.3947 5 1 1.5033 2.6199 0.8028 6 1 3.5955 1.4121 0.5919 7 6 2.0045 -1.1940 -0.0005 8 1 3.0801 -1.1967 0.0986 9 6 1.2575 -2.4954 -0.1394 10 8 0.2890 -2.6312 0.9025 11 6 2.2365 -3.6871 -0.1291 12 6 2.0283 -4.3288 -1.4836 13 8 2.6130 -5.3083 -1.8938 14 7 1.0999 -3.6403 -2.1591 15 6 0.5988 -2.5893 -1.4984 16 8 -0.2483 -1.8326 -1.9219 17 1 -0.4850 0.8400 0.0004 18 1 -0.3515 -1.9078 0.9408 19 1 1.9831 -4.3848 0.6689 20 1 3.2639 -3.3386 -0.0240 21 1 0.8143 -3.8826 -3.0539 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260060474.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:18 Heat of formation + Delta-G solvation = -141.960140 kcal Electronic energy + Delta-G solvation = -11538.735819 eV Core-core repulsion = 9185.957427 eV Total energy + Delta-G solvation = -2352.778392 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 185.052 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.45696 -39.46443 -37.39356 -36.21851 -34.24604 -31.86148 -27.95877 -25.53928 -22.50386 -21.86509 -19.38761 -18.73538 -17.60123 -16.92424 -16.81309 -16.20696 -15.47062 -14.99175 -14.96081 -14.39138 -13.62889 -13.25208 -12.85139 -12.70759 -12.39535 -12.21229 -11.40124 -11.29869 -11.17944 -10.66759 -10.15476 -8.31362 -6.50750 0.69895 1.43609 1.46682 1.56806 1.96776 2.05291 2.36616 3.00017 3.38001 3.72040 3.88370 4.38794 4.82400 4.98548 5.21309 5.61586 5.72742 5.86121 6.44791 6.58027 7.09759 7.17552 7.28630 8.73081 Molecular weight = 185.05amu Principal moments of inertia in cm(-1) A = 0.055020 B = 0.015958 C = 0.015145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.784710 B = 1754.179253 C = 1848.329616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.030 3.970 3 Si 0.969 3.031 4 H -0.283 1.283 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.218 3.782 10 O -0.575 6.575 11 C -0.137 4.137 12 C 0.548 3.452 13 O -0.527 6.527 14 N -0.676 5.676 15 C 0.497 3.503 16 O -0.496 6.496 17 H 0.273 0.727 18 H 0.388 0.612 19 H 0.130 0.870 20 H 0.137 0.863 21 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 -2.506 -0.399 3.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.175 4.175 3 Si 0.794 3.206 4 H -0.209 1.209 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.612 4.612 8 H 0.104 0.896 9 C 0.175 3.825 10 O -0.385 6.385 11 C -0.176 4.176 12 C 0.338 3.662 13 O -0.403 6.403 14 N -0.343 5.343 15 C 0.286 3.714 16 O -0.366 6.366 17 H 0.083 0.917 18 H 0.241 0.759 19 H 0.148 0.852 20 H 0.155 0.845 21 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.094 -2.975 -0.523 4.324 hybrid contribution -0.440 1.319 -0.823 1.616 sum 2.654 -1.656 -1.346 3.405 Atomic orbital electron populations 1.69629 1.07268 1.28858 1.45657 1.25922 0.95781 1.03282 0.92556 0.85362 0.79168 0.78243 0.77839 1.20900 1.20501 1.18140 1.21720 0.94937 0.89914 1.54608 0.89617 1.19436 0.86365 0.95055 0.81667 1.86149 1.46548 1.52397 1.53447 1.22534 1.03017 0.97373 0.94671 1.20875 0.76150 0.80981 0.88196 1.90705 1.49437 1.25533 1.74656 1.44959 1.39623 1.29140 1.20552 1.23109 0.79777 0.77471 0.91049 1.90656 1.30343 1.42089 1.73532 0.91694 0.75868 0.85240 0.84550 0.75254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.55 9.65 21.45 0.21 -46.34 14 2 C 0.03 1.52 5.19 84.65 0.44 1.96 14 3 Si 0.97 40.11 29.54 68.60 2.03 42.13 14 4 H -0.28 -11.86 7.11 99.48 0.71 -11.15 14 5 H -0.28 -11.38 7.11 99.48 0.71 -10.67 14 6 H -0.26 -10.08 7.11 99.48 0.71 -9.37 14 7 C -0.57 -28.29 8.28 25.60 0.21 -28.08 14 8 H 0.09 3.96 7.40 -2.91 -0.02 3.94 14 9 C 0.22 10.04 1.08 -11.68 -0.01 10.03 14 10 O -0.58 -27.96 13.02 -148.98 -1.94 -29.90 14 11 C -0.14 -5.01 6.47 30.46 0.20 -4.81 14 12 C 0.55 20.17 8.55 87.99 0.75 20.92 14 13 O -0.53 -20.51 18.02 -2.85 -0.05 -20.56 14 14 N -0.68 -25.50 5.48 -427.81 -2.34 -27.84 14 15 C 0.50 23.09 7.44 87.99 0.65 23.74 14 16 O -0.50 -26.32 16.20 -2.86 -0.05 -26.37 14 17 H 0.27 13.90 8.31 -92.71 -0.77 13.13 14 18 H 0.39 20.07 6.84 -74.06 -0.51 19.56 14 19 H 0.13 4.29 8.00 -2.39 -0.02 4.27 14 20 H 0.14 4.49 7.47 -2.39 -0.02 4.48 14 21 H 0.41 13.17 8.96 -92.71 -0.83 12.34 14 Total: -1.00 -58.66 197.21 0.05 -58.61 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: -0.05 Total: 26.50 kcal Atomic # 6 Polarization: 21.52 SS G_CDS: 2.24 Total: 23.76 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -2.14 Total: -74.18 kcal Atomic # 8 Polarization: -74.79 SS G_CDS: -2.04 Total: -76.83 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.13 kcal Total: -58.66 0.05 -58.61 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060474.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.349 kcal (2) G-P(sol) polarization free energy of solvation -58.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds