Wall clock time and date at job start Mon Mar 30 2020 02:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99677 * 2 1 4 4 H 1.48504 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47374 * 300.00052 * 3 2 1 6 6 H 1.48505 * 109.46850 * 60.00053 * 3 2 1 7 7 C 1.37878 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99473 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99928 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47231 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.45255 * 55.02502 * 10 9 7 12 12 N 1.46850 * 109.46233 * 295.05549 * 10 9 7 13 13 C 1.46845 * 111.19654 * 178.24060 * 12 10 9 14 14 C 1.53034 * 109.52676 * 61.74248 * 13 12 10 15 15 C 1.53126 * 109.27454 * 300.81918 * 14 13 12 16 16 C 1.53033 * 109.46442 * 174.99935 * 10 9 7 17 17 H 1.09004 * 109.50318 * 59.25573 * 16 10 9 18 18 O 1.42899 * 109.53494 * 299.15376 * 16 10 9 19 19 H 0.96996 * 120.00108 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47443 * 60.00232 * 9 7 2 21 21 H 1.09002 * 109.47168 * 299.99885 * 9 7 2 22 22 H 1.00905 * 110.99521 * 302.33470 * 12 10 9 23 23 H 1.08995 * 109.46315 * 301.72098 * 13 12 10 24 24 H 1.09005 * 109.45975 * 181.75612 * 13 12 10 25 25 H 1.08997 * 109.50792 * 180.88024 * 14 13 12 26 26 H 1.09006 * 109.50471 * 60.75677 * 14 13 12 27 27 H 1.08999 * 109.52028 * 177.55723 * 15 14 13 28 28 H 1.09000 * 109.52072 * 297.68377 * 15 14 13 29 29 H 0.96700 * 113.99738 * 180.17167 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 1 2.9291 -3.5551 0.8427 12 7 3.0091 -3.6529 -1.2538 13 6 4.0058 -4.7310 -1.2764 14 6 3.2973 -6.0846 -1.1888 15 6 2.4817 -6.1453 0.1057 16 6 1.4843 -4.9837 0.1263 17 1 0.7905 -5.0849 -0.7083 18 8 0.7571 -5.0011 1.3563 19 1 -0.4850 0.8400 -0.0004 20 1 0.6249 -2.5571 -0.8897 21 1 0.6242 -2.5566 0.8903 22 1 2.3943 -3.7119 -2.0517 23 1 4.6813 -4.6190 -0.4283 24 1 4.5761 -4.6789 -2.2040 25 1 4.0382 -6.8840 -1.1899 26 1 2.6319 -6.2031 -2.0441 27 1 1.9408 -7.0906 0.1514 28 1 3.1513 -6.0670 0.9622 29 1 0.2523 -5.8127 1.5032 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260191194.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:12 Heat of formation + Delta-G solvation = -66.029020 kcal Electronic energy + Delta-G solvation = -11722.523604 eV Core-core repulsion = 9644.704021 eV Total energy + Delta-G solvation = -2077.819583 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.85171 -35.37581 -33.23696 -31.36888 -29.79271 -26.87297 -23.69620 -22.45214 -20.53025 -19.88716 -16.88502 -16.09654 -15.00394 -14.55965 -14.47029 -14.16546 -13.68081 -12.90301 -12.29366 -12.10764 -11.92635 -11.26061 -11.02551 -10.87898 -10.69942 -10.56086 -10.35520 -10.00119 -9.59514 -9.05637 -8.93388 -8.20021 -7.65586 -5.82052 -3.80052 3.42923 3.49704 3.55949 4.56582 4.61647 4.91428 5.03582 5.17789 5.29056 5.54239 5.57431 5.71173 5.73257 5.92326 5.97471 6.19936 6.28439 6.39195 6.61141 6.97749 7.62336 7.77611 7.99467 8.08027 8.14904 8.23495 8.64506 9.26813 9.81193 11.30050 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.055163 B = 0.011393 C = 0.009942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.465879 B = 2456.964195 C = 2815.755933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.049 3.951 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.492 4.492 8 H 0.061 0.939 9 C 0.033 3.967 10 C 0.102 3.898 11 H 0.074 0.926 12 N -0.655 5.655 13 C 0.052 3.948 14 C -0.154 4.154 15 C -0.152 4.152 16 C 0.072 3.928 17 H 0.045 0.955 18 O -0.552 6.552 19 H 0.256 0.744 20 H 0.011 0.989 21 H 0.032 0.968 22 H 0.336 0.664 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.360 -11.720 -1.761 12.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.150 4.150 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.531 4.531 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.008 4.008 11 H 0.092 0.908 12 N -0.284 5.284 13 C -0.079 4.079 14 C -0.194 4.194 15 C -0.190 4.190 16 C 0.011 3.989 17 H 0.063 0.937 18 O -0.355 6.355 19 H 0.066 0.934 20 H 0.029 0.971 21 H 0.050 0.950 22 H 0.154 0.846 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 4.949 -10.503 -1.476 11.704 hybrid contribution -0.438 -0.589 -0.266 0.781 sum 4.511 -11.093 -1.742 12.101 Atomic orbital electron populations 1.69988 1.06004 1.26062 1.52398 1.25023 0.94782 0.99112 0.96096 0.86553 0.80214 0.84087 0.77214 1.19782 1.21338 1.21394 1.21247 0.93347 0.90339 1.48118 0.92070 1.19125 0.93001 0.90825 0.97508 1.21750 0.95221 0.92340 0.91460 0.90780 1.60727 1.18826 1.44287 1.04570 1.22096 0.95733 0.88060 1.01974 1.22298 0.99593 1.00076 0.97415 1.22351 0.99359 0.98682 0.98627 1.22853 0.92232 0.97568 0.86232 0.93671 1.86684 1.65987 1.42629 1.40159 0.93422 0.97069 0.94997 0.84573 0.91276 0.91231 0.91985 0.92258 0.92725 0.91357 0.79239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.14 13.29 55.43 0.74 -27.41 15 2 C 0.05 1.46 5.46 -17.82 -0.10 1.36 15 3 Si 0.89 22.63 29.54 -169.99 -5.02 17.61 15 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 15 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 15 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 15 7 C -0.49 -14.39 8.84 -34.44 -0.30 -14.70 15 8 H 0.06 1.79 7.74 -52.48 -0.41 1.38 15 9 C 0.03 0.87 4.53 -27.88 -0.13 0.75 15 10 C 0.10 2.19 2.10 -67.72 -0.14 2.05 15 11 H 0.07 1.70 8.14 -51.93 -0.42 1.28 15 12 N -0.65 -12.54 6.22 -106.76 -0.66 -13.20 15 13 C 0.05 0.77 6.55 -3.84 -0.03 0.75 15 14 C -0.15 -1.99 6.08 -26.65 -0.16 -2.16 15 15 C -0.15 -2.15 5.63 -26.60 -0.15 -2.30 15 16 C 0.07 1.28 3.04 -26.65 -0.08 1.20 15 17 H 0.05 0.80 8.14 -51.93 -0.42 0.37 15 18 O -0.55 -10.08 12.61 -35.23 -0.44 -10.53 15 19 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 20 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 15 21 H 0.03 0.94 7.57 -51.93 -0.39 0.55 15 22 H 0.34 6.20 8.79 -39.29 -0.35 5.86 15 23 H 0.07 1.06 8.14 -51.93 -0.42 0.63 15 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 15 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 29 H 0.36 4.64 9.08 45.56 0.41 5.06 15 LS Contribution 239.97 15.07 3.62 3.62 Total: -1.00 -32.37 239.97 -6.53 -38.91 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -3.67 Total: 4.05 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -1.09 Total: -13.05 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.07 Total: -40.61 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.44 Total: -10.53 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -32.37 -6.53 -38.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260191194.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.123 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds