Wall clock time and date at job start Mon Mar 30 2020 02:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.33869 * 118.73061 * 2 1 4 4 O 1.21275 * 118.83384 * 1.90642 * 3 2 1 5 5 C 1.50347 * 122.32901 * 181.90745 * 3 2 1 6 6 O 1.42963 * 109.81227 * 344.10225 * 5 3 2 7 7 C 1.43240 * 112.98805 * 49.59662 * 6 5 3 8 8 C 1.46100 * 118.72459 * 180.02562 * 2 1 3 9 9 H 1.09001 * 109.31713 * 281.70682 * 8 2 1 10 10 C 1.50701 * 109.39709 * 41.47780 * 8 2 1 11 11 H 1.08004 * 119.99430 * 5.87852 * 10 8 2 12 12 C 1.37878 * 119.99975 * 185.87850 * 10 8 2 13 13 N 1.31517 * 119.99930 * 6.73968 * 12 10 8 14 14 Si 1.86792 * 119.99814 * 186.73805 * 12 10 8 15 15 H 1.48499 * 109.47327 * 84.99472 * 14 12 10 16 16 H 1.48500 * 109.47372 * 324.99379 * 14 12 10 17 17 H 1.48502 * 109.47244 * 204.99253 * 14 12 10 18 18 H 1.09004 * 109.46628 * 269.98055 * 1 2 3 19 19 H 1.09004 * 109.47082 * 29.97445 * 1 2 3 20 20 H 1.08998 * 109.47764 * 149.98028 * 1 2 3 21 21 H 1.09005 * 109.41449 * 224.00014 * 5 3 2 22 22 H 1.09000 * 109.35948 * 104.16833 * 5 3 2 23 23 H 1.09004 * 109.60392 * 171.88170 * 7 6 5 24 24 H 1.09003 * 109.74273 * 51.47757 * 7 6 5 25 25 H 0.96992 * 119.99791 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1085 1.1739 0.0000 4 8 1.4586 2.1972 0.0353 5 6 3.6084 1.2686 -0.0423 6 8 4.1834 0.0024 0.2893 7 6 3.6149 -1.0820 -0.4541 8 6 2.1672 -1.2812 -0.0006 9 1 2.1574 -1.6982 1.0065 10 6 1.4738 -2.2315 -0.9425 11 1 0.6562 -1.8830 -1.5561 12 6 1.8832 -3.5458 -1.0208 13 7 2.7869 -4.0041 -0.1824 14 14 1.1543 -4.6753 -2.3178 15 1 1.9022 -4.5150 -3.5907 16 1 -0.2723 -4.3245 -2.5345 17 1 1.2535 -6.0843 -1.8595 18 1 -0.3633 -0.0003 1.0277 19 1 -0.3633 0.8902 -0.5135 20 1 -0.3634 -0.8898 -0.5141 21 1 3.9445 2.0179 0.6745 22 1 3.9240 1.5585 -1.0445 23 1 4.1852 -1.9921 -0.2673 24 1 3.6359 -0.8495 -1.5188 25 1 3.0746 -4.9288 -0.2373 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260224056.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:32 Heat of formation + Delta-G solvation = -77.250063 kcal Electronic energy + Delta-G solvation = -11730.488714 eV Core-core repulsion = 9516.349455 eV Total energy + Delta-G solvation = -2214.139258 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.71544 -36.82953 -34.97038 -32.73996 -29.13977 -27.93094 -25.99469 -23.75618 -22.18575 -18.16891 -16.92396 -16.72018 -16.10065 -14.93966 -14.53332 -14.30091 -14.00663 -13.29670 -12.72990 -12.39109 -11.87677 -11.60529 -11.21173 -11.10434 -10.86468 -10.42080 -10.28046 -9.71412 -9.65061 -8.86661 -8.50004 -7.73333 -6.35722 -4.43670 3.14695 3.21063 3.22795 3.25866 3.84186 4.17811 4.66007 4.97737 5.23302 5.67693 5.81415 6.16469 6.22329 6.24830 6.37478 6.59457 6.98406 7.09647 7.25057 7.40605 7.65532 8.00274 8.39251 8.57873 8.85442 9.24426 10.71367 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.054391 B = 0.014575 C = 0.012354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.671511 B = 1920.609124 C = 2266.011085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.582 5.582 3 C 0.475 3.525 4 O -0.582 6.582 5 C 0.054 3.946 6 O -0.390 6.390 7 C 0.054 3.946 8 C 0.235 3.765 9 H 0.051 0.949 10 C -0.541 4.541 11 H 0.071 0.929 12 C 0.070 3.930 13 N -0.884 5.884 14 Si 0.904 3.096 15 H -0.277 1.277 16 H -0.272 1.272 17 H -0.284 1.284 18 H 0.042 0.958 19 H 0.060 0.940 20 H 0.088 0.912 21 H 0.115 0.885 22 H 0.076 0.924 23 H 0.122 0.878 24 H 0.044 0.956 25 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 2.868 -1.235 3.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.312 5.312 3 C 0.262 3.738 4 O -0.465 6.465 5 C -0.026 4.026 6 O -0.308 6.308 7 C -0.022 4.022 8 C 0.134 3.866 9 H 0.069 0.931 10 C -0.579 4.579 11 H 0.089 0.911 12 C -0.135 4.135 13 N -0.520 5.520 14 Si 0.731 3.269 15 H -0.202 1.202 16 H -0.197 1.197 17 H -0.209 1.209 18 H 0.060 0.940 19 H 0.078 0.922 20 H 0.106 0.894 21 H 0.132 0.868 22 H 0.094 0.906 23 H 0.140 0.860 24 H 0.063 0.937 25 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.352 3.132 -1.018 3.312 hybrid contribution -0.520 -0.790 -0.877 1.290 sum -0.168 2.342 -1.896 3.017 Atomic orbital electron populations 1.21611 0.80594 1.02921 1.00904 1.47830 1.07459 1.07055 1.68878 1.21007 0.91747 0.83730 0.77267 1.90613 1.67973 1.34575 1.53321 1.22585 0.88893 0.88666 1.02485 1.88093 1.62302 1.15099 1.65355 1.23405 0.95891 0.89033 0.93917 1.19495 0.88953 0.79148 0.99034 0.93144 1.21215 1.18868 0.94131 1.23667 0.91089 1.24968 0.95007 0.97733 0.95784 1.69910 1.30580 1.16598 1.34929 0.86411 0.79649 0.79492 0.81395 1.20239 1.19701 1.20928 0.93964 0.92163 0.89400 0.86762 0.90615 0.86011 0.93728 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.68 10.03 59.85 0.60 2.28 15 2 N -0.58 -13.16 3.11 -175.97 -0.55 -13.71 15 3 C 0.48 10.41 7.59 -11.56 -0.09 10.32 15 4 O -0.58 -13.74 16.39 5.56 0.09 -13.65 15 5 C 0.05 1.00 6.99 35.83 0.25 1.25 15 6 O -0.39 -8.18 10.85 -35.23 -0.38 -8.57 15 7 C 0.05 1.21 5.90 37.17 0.22 1.43 15 8 C 0.24 5.66 2.85 -69.29 -0.20 5.46 15 9 H 0.05 1.34 8.10 -51.93 -0.42 0.92 15 10 C -0.54 -13.54 7.70 -34.44 -0.27 -13.81 15 11 H 0.07 1.76 6.23 -52.48 -0.33 1.43 15 12 C 0.07 1.75 5.27 -17.82 -0.09 1.65 15 13 N -0.88 -23.01 12.14 55.43 0.67 -22.34 15 14 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 15 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 18 H 0.04 0.81 8.14 -51.93 -0.42 0.38 15 19 H 0.06 1.19 7.29 -51.93 -0.38 0.81 15 20 H 0.09 1.77 5.68 -51.93 -0.30 1.48 15 21 H 0.11 1.84 8.14 -51.93 -0.42 1.42 15 22 H 0.08 1.26 8.14 -51.93 -0.42 0.83 15 23 H 0.12 2.89 7.08 -51.93 -0.37 2.52 15 24 H 0.04 0.98 8.06 -51.93 -0.42 0.56 15 25 H 0.27 6.67 8.31 -40.82 -0.34 6.33 15 LS Contribution 214.87 15.07 3.24 3.24 Total: -1.00 -27.82 214.87 -4.13 -31.96 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -2.61 Total: -0.06 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 0.43 Total: 8.59 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.12 Total: -36.05 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.29 Total: -22.21 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -27.82 -4.13 -31.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260224056.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.293 kcal (2) G-P(sol) polarization free energy of solvation -27.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds