Wall clock time and date at job start Mon Mar 30 2020 01:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86805 * 119.99629 * 2 1 4 4 H 1.48496 * 109.46771 * 239.99352 * 3 2 1 5 5 H 1.48493 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46998 * 119.99982 * 3 2 1 7 7 C 1.37876 * 120.00376 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00356 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99579 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47094 * 299.99084 * 9 7 2 11 11 N 1.46897 * 109.47786 * 59.99667 * 9 7 2 12 12 C 1.50708 * 109.46900 * 179.97438 * 9 7 2 13 13 N 1.31171 * 121.09465 * 104.99937 * 12 9 7 14 14 C 1.30919 * 117.01216 * 180.02562 * 13 12 9 15 15 S 1.72308 * 105.03752 * 359.97438 * 14 13 12 16 16 N 1.30239 * 121.09616 * 285.01955 * 12 9 7 17 17 H 0.96996 * 120.00147 * 0.02562 * 1 2 3 18 18 H 1.00907 * 110.99552 * 296.04774 * 11 9 7 19 19 H 1.00900 * 110.99881 * 59.99507 * 11 9 7 20 20 H 1.08001 * 127.48093 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6243 -2.5567 0.8904 11 7 0.4070 -2.5773 -1.1991 12 6 2.2306 -3.6445 0.0005 13 7 2.4498 -4.3484 1.0855 14 6 3.3172 -5.3249 0.9956 15 16 3.8626 -5.2894 -0.6385 16 7 2.8874 -3.9680 -1.0766 17 1 -0.4850 0.8400 -0.0004 18 1 -0.3004 -1.8577 -1.1909 19 1 0.9652 -2.5260 -2.0380 20 1 3.6242 -6.0051 1.7763 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260592828.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:37 Heat of formation + Delta-G solvation = 27.672456 kcal Electronic energy + Delta-G solvation = -9145.602200 eV Core-core repulsion = 7275.225251 eV Total energy + Delta-G solvation = -1870.376949 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 185.032 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.16534 -36.55491 -33.69400 -32.42941 -28.67061 -26.95639 -24.04225 -20.64189 -19.77426 -18.73167 -17.06313 -16.53514 -16.08339 -15.97679 -14.67150 -14.22352 -13.73675 -13.15831 -12.84905 -12.80641 -12.43591 -12.04450 -11.89856 -11.40769 -10.79773 -10.68189 -10.02940 -9.34592 -8.22961 -6.47547 -0.39437 0.44111 0.79347 1.37045 1.38034 1.46745 1.75543 2.33800 2.94071 3.12296 4.20042 4.54899 4.61818 4.89962 5.27533 5.52984 5.85289 6.46397 6.70151 6.80195 6.99005 7.26820 8.75116 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.066234 B = 0.012352 C = 0.011624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.645322 B = 2266.346917 C = 2408.148747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.029 3.971 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.564 4.564 8 H 0.041 0.959 9 C 0.291 3.709 10 H 0.036 0.964 11 N -0.838 5.838 12 C 0.291 3.709 13 N -0.541 5.541 14 C 0.084 3.916 15 S 0.204 5.796 16 N -0.495 5.495 17 H 0.273 0.727 18 H 0.354 0.646 19 H 0.323 0.677 20 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.790 -7.984 0.984 10.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.173 4.173 3 Si 0.793 3.207 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.605 4.605 8 H 0.059 0.941 9 C 0.176 3.824 10 H 0.054 0.946 11 N -0.369 5.369 12 C 0.001 3.999 13 N -0.262 5.262 14 C -0.224 4.224 15 S 0.341 5.659 16 N -0.323 5.323 17 H 0.083 0.917 18 H 0.170 0.830 19 H 0.133 0.867 20 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 6.771 -8.566 0.077 10.919 hybrid contribution 0.189 2.058 0.636 2.163 sum 6.960 -6.508 0.713 9.555 Atomic orbital electron populations 1.69806 1.06833 1.28676 1.49518 1.25709 0.95912 1.02350 0.93324 0.85464 0.78370 0.78241 0.78668 1.19957 1.19795 1.19837 1.21701 0.92948 0.91893 1.53912 0.94113 1.17373 0.87561 0.85574 0.91898 0.94609 1.59307 1.18107 1.55649 1.03795 1.24075 0.96264 0.96431 0.83095 1.67313 1.20414 1.08845 1.29630 1.31200 0.92361 0.96429 1.02398 1.84369 1.43734 1.29755 1.08007 1.77464 1.14474 1.13151 1.27235 0.91708 0.82998 0.86703 0.71050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.51 11.54 21.45 0.25 -50.26 14 2 C 0.03 1.56 5.38 84.65 0.46 2.02 14 3 Si 0.97 43.39 29.54 68.60 2.03 45.42 14 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 14 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 14 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 14 7 C -0.56 -31.98 8.71 25.60 0.22 -31.75 14 8 H 0.04 2.36 7.74 -2.91 -0.02 2.34 14 9 C 0.29 15.74 3.19 43.43 0.14 15.88 14 10 H 0.04 2.13 8.14 -2.39 -0.02 2.11 14 11 N -0.84 -43.16 9.15 -174.95 -1.60 -44.76 14 12 C 0.29 13.83 6.43 139.40 0.90 14.73 14 13 N -0.54 -22.22 10.56 -201.94 -2.13 -24.36 14 14 C 0.08 2.33 12.70 130.38 1.66 3.99 14 15 S 0.20 6.20 23.81 -56.49 -1.35 4.85 14 16 N -0.49 -21.90 11.69 -60.78 -0.71 -22.61 14 17 H 0.27 14.28 8.31 -92.71 -0.77 13.51 14 18 H 0.35 18.88 7.08 -89.69 -0.63 18.25 14 19 H 0.32 16.42 8.61 -89.69 -0.77 15.64 14 20 H 0.27 3.82 8.06 -2.91 -0.02 3.79 14 Total: -1.00 -64.74 201.94 -0.27 -65.01 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -0.12 Total: 21.84 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 3.37 Total: 4.86 kcal Atomic # 7 Polarization: -137.79 SS G_CDS: -4.20 Total: -141.99 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 6.20 SS G_CDS: -1.35 Total: 4.85 kcal Total: -64.74 -0.27 -65.01 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260592828.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.682 kcal (2) G-P(sol) polarization free energy of solvation -64.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds