Wall clock time and date at job start Mon Mar 30 2020 01:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 110.50347 * 2 1 4 4 C 1.50694 * 109.47281 * 62.25843 * 3 2 1 5 5 H 1.07994 * 120.00056 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99985 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00151 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00045 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47289 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47085 * 120.00212 * 8 6 4 11 11 H 1.48498 * 109.47186 * 239.99820 * 8 6 4 12 12 C 1.54090 * 110.56677 * 237.25525 * 2 1 3 13 13 O 1.45693 * 104.00959 * 241.42928 * 12 2 1 14 14 C 1.33771 * 109.48003 * 359.97438 * 13 12 2 15 15 O 1.21513 * 123.07308 * 179.97438 * 14 13 12 16 16 N 1.34000 * 113.85308 * 0.24691 * 14 13 12 17 17 H 1.08994 * 109.47292 * 182.03913 * 1 2 3 18 18 H 1.08999 * 109.46956 * 302.04392 * 1 2 3 19 19 H 1.08997 * 109.46712 * 62.04001 * 1 2 3 20 20 H 1.09003 * 109.46625 * 182.25445 * 3 2 1 21 21 H 1.09001 * 109.47315 * 302.25277 * 3 2 1 22 22 H 0.97006 * 120.00054 * 180.02562 * 7 6 4 23 23 H 1.09001 * 110.51909 * 122.79470 * 12 2 1 24 24 H 1.08999 * 110.51881 * 0.06083 * 12 2 1 25 25 H 0.97007 * 125.55897 * 179.73234 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0659 1.4331 0.0000 4 6 1.6224 2.1353 1.2574 5 1 1.0184 1.6119 1.9838 6 6 1.9879 3.4458 1.4806 7 7 2.7239 4.0830 0.5964 8 14 1.4375 4.3165 3.0390 9 1 0.6256 3.3870 3.8649 10 1 2.6296 4.7509 3.8106 11 1 0.6204 5.5035 2.6806 12 6 2.0713 -0.7803 -1.2134 13 8 2.8282 -1.8747 -0.6199 14 6 2.7672 -1.7875 0.7136 15 8 3.3141 -2.5793 1.4555 16 7 2.0431 -0.7506 1.1563 17 1 -0.3633 -1.0269 0.0366 18 1 -0.3633 0.5452 0.8711 19 1 -0.3632 0.4818 -0.9077 20 1 3.1550 1.4136 -0.0404 21 1 1.6795 1.9655 -0.8691 22 1 2.9813 5.0050 0.7536 23 1 2.7232 -0.1470 -1.8151 24 1 1.2498 -1.1669 -1.8165 25 1 1.8845 -0.5299 2.0875 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260630698.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:37 Heat of formation + Delta-G solvation = -87.715010 kcal Electronic energy + Delta-G solvation = -11542.425158 eV Core-core repulsion = 9327.832106 eV Total energy + Delta-G solvation = -2214.593053 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.06864 -36.80048 -35.42628 -32.79352 -30.90074 -27.52411 -26.50569 -23.42915 -21.70390 -20.14450 -17.34556 -16.55063 -16.20977 -15.60500 -14.65326 -14.22661 -13.64427 -13.35169 -12.97776 -12.68356 -12.05771 -11.77827 -11.25831 -11.12413 -10.65174 -10.60615 -10.28275 -10.04990 -9.91554 -9.28927 -8.56462 -8.54650 -6.19556 -4.23535 3.20608 3.29097 3.29710 3.31238 3.37958 4.17258 4.29295 4.78522 5.17741 5.20673 5.46651 5.69450 5.88717 5.94515 6.25381 6.49890 6.64358 7.24836 7.34835 7.50642 7.73702 7.89575 8.12713 8.71696 8.79410 9.41840 10.91435 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.054633 B = 0.012120 C = 0.011502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.391048 B = 2309.596189 C = 2433.686085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.122 3.878 3 C 0.022 3.978 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.044 3.956 13 O -0.340 6.340 14 C 0.642 3.358 15 O -0.551 6.551 16 N -0.707 5.707 17 H 0.044 0.956 18 H 0.077 0.923 19 H 0.067 0.933 20 H 0.026 0.974 21 H 0.035 0.965 22 H 0.263 0.737 23 H 0.104 0.896 24 H 0.096 0.904 25 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.643 -4.589 -2.773 7.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.036 3.964 3 C -0.015 4.015 4 C -0.560 4.560 5 H 0.077 0.923 6 C -0.142 4.142 7 N -0.528 5.528 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 C -0.031 4.031 13 O -0.251 6.251 14 C 0.394 3.606 15 O -0.439 6.439 16 N -0.376 5.376 17 H 0.063 0.937 18 H 0.096 0.904 19 H 0.086 0.914 20 H 0.044 0.956 21 H 0.054 0.946 22 H 0.072 0.928 23 H 0.122 0.878 24 H 0.114 0.886 25 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -4.140 -5.028 -2.761 7.074 hybrid contribution -0.369 0.967 1.190 1.578 sum -4.510 -4.061 -1.570 6.268 Atomic orbital electron populations 1.22019 0.93249 1.00681 1.04047 1.22042 0.95330 0.96053 0.83006 1.19495 0.96908 0.86400 0.98733 1.21025 1.33266 0.96970 1.04713 0.92308 1.24993 0.94891 0.97591 0.96699 1.69947 1.36412 1.11543 1.34936 0.86508 0.78502 0.79674 0.83162 1.19690 1.20959 1.20937 1.24573 0.95912 0.86301 0.96274 1.87136 1.69171 1.49354 1.19406 1.18532 0.78837 0.81770 0.81423 1.90991 1.51865 1.46093 1.54971 1.46063 1.53298 1.27689 1.10591 0.93712 0.90358 0.91358 0.95573 0.94637 0.92760 0.87802 0.88557 0.72305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.55 37.16 0.32 -1.87 15 2 C 0.12 2.18 1.01 -130.92 -0.13 2.05 15 3 C 0.02 0.50 4.11 -27.88 -0.11 0.38 15 4 C -0.52 -12.93 8.02 -34.44 -0.28 -13.20 15 5 H 0.06 1.39 6.61 -52.49 -0.35 1.05 15 6 C 0.06 1.59 5.46 -17.82 -0.10 1.50 15 7 N -0.89 -24.82 13.29 55.43 0.74 -24.09 15 8 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 15 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 12 C 0.04 0.69 7.53 37.73 0.28 0.98 15 13 O -0.34 -6.42 11.09 -37.83 -0.42 -6.84 15 14 C 0.64 13.24 9.16 53.71 0.49 13.73 15 15 O -0.55 -12.96 18.04 -19.12 -0.34 -13.30 15 16 N -0.71 -13.39 5.41 -52.01 -0.28 -13.67 15 17 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 18 H 0.08 1.30 6.80 -51.93 -0.35 0.95 15 19 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 20 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.26 6.97 8.31 -40.82 -0.34 6.64 15 23 H 0.10 1.53 7.73 -51.93 -0.40 1.12 15 24 H 0.10 1.18 7.73 -51.93 -0.40 0.78 15 25 H 0.43 7.97 8.57 -40.82 -0.35 7.62 15 LS Contribution 220.81 15.07 3.33 3.33 Total: -1.00 -29.78 220.81 -4.21 -33.99 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -2.68 Total: 1.76 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 0.47 Total: 3.57 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.46 Total: -37.76 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.76 Total: -20.14 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -29.78 -4.21 -33.99 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260630698.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.723 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds