Wall clock time and date at job start Mon Mar 30 2020 02:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42904 * 109.46964 * 2 1 4 4 C 1.42906 * 113.99577 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.82460 * 51.31168 * 4 3 2 6 6 C 1.54692 * 110.92792 * 174.99842 * 4 3 2 7 7 C 1.51696 * 102.64029 * 93.66572 * 6 4 3 8 8 C 1.39853 * 125.97730 * 195.11144 * 7 6 4 9 9 H 1.08004 * 119.99757 * 359.97438 * 8 7 6 10 10 C 1.40539 * 120.00217 * 180.02562 * 8 7 6 11 11 N 1.30510 * 119.99950 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00088 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47204 * 89.99581 * 12 10 8 14 14 H 1.48496 * 109.47206 * 209.99575 * 12 10 8 15 15 H 1.48502 * 109.46766 * 329.99740 * 12 10 8 16 16 N 1.30723 * 108.05280 * 15.38148 * 7 6 4 17 17 O 1.41413 * 112.52515 * 0.50830 * 16 7 6 18 18 H 1.08994 * 109.47098 * 59.99561 * 1 2 3 19 19 H 1.08992 * 109.47680 * 180.02562 * 1 2 3 20 20 H 1.09009 * 109.47059 * 300.00013 * 1 2 3 21 21 H 1.08996 * 109.46816 * 239.99836 * 2 1 3 22 22 H 1.09001 * 109.47036 * 120.00045 * 2 1 3 23 23 H 1.09000 * 110.77884 * 335.38224 * 6 4 3 24 24 H 1.09002 * 110.94069 * 212.02965 * 6 4 3 25 25 H 0.97000 * 120.00171 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8672 0.8560 -0.7961 6 6 3.8681 2.9386 -0.1265 7 6 4.0432 3.3574 1.3209 8 6 4.1436 4.6712 1.7897 9 1 4.0982 5.4973 1.0953 10 6 4.3047 4.9167 3.1640 11 7 4.3601 3.9185 4.0030 12 14 4.4382 6.6716 3.7902 13 1 3.0829 7.1875 4.1099 14 1 5.2792 6.6980 5.0137 15 1 5.0584 7.5243 2.7445 16 7 4.0896 2.2754 2.0530 17 8 3.9769 1.0949 1.2826 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8901 21 1 1.8933 -0.5138 -0.8899 22 1 1.8934 -0.5138 0.8900 23 1 3.0915 3.5317 -0.6093 24 1 4.8096 3.0216 -0.6696 25 1 4.4709 4.0879 4.9517 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260659790.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:48 Heat of formation + Delta-G solvation = -47.788494 kcal Electronic energy + Delta-G solvation = -11299.119588 eV Core-core repulsion = 9086.257879 eV Total energy + Delta-G solvation = -2212.861709 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.49308 -36.08894 -33.66007 -30.95678 -30.72369 -27.80654 -25.93703 -22.41445 -21.54912 -19.71552 -17.07890 -16.29976 -15.43058 -14.82362 -14.35451 -13.74421 -13.25805 -13.03350 -12.42941 -11.94813 -11.61917 -11.36048 -11.24722 -10.99819 -10.89436 -10.49854 -10.16093 -9.97335 -9.42744 -9.31862 -8.24907 -7.80852 -6.55923 -4.64843 3.03332 3.12809 3.16219 3.95544 3.98859 4.23936 5.00112 5.23195 5.40005 5.57503 5.63958 5.81708 5.93036 5.99118 6.23524 6.34525 6.41141 6.45464 6.61859 6.99229 7.30409 7.81431 8.16896 8.67101 8.89582 9.92767 10.37920 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.066669 B = 0.010327 C = 0.010182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.885668 B = 2710.684328 C = 2749.424298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 O -0.391 6.391 4 C 0.198 3.802 5 H 0.078 0.922 6 C -0.132 4.132 7 C 0.178 3.822 8 C -0.437 4.437 9 H 0.086 0.914 10 C 0.070 3.930 11 N -0.743 5.743 12 Si 0.916 3.084 13 H -0.269 1.269 14 H -0.277 1.277 15 H -0.262 1.262 16 N -0.372 5.372 17 O -0.276 6.276 18 H 0.057 0.943 19 H 0.064 0.936 20 H 0.062 0.938 21 H 0.037 0.963 22 H 0.052 0.948 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.104 -1.176 -5.752 6.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.015 4.015 3 O -0.312 6.312 4 C 0.101 3.899 5 H 0.096 0.904 6 C -0.172 4.172 7 C 0.012 3.988 8 C -0.477 4.477 9 H 0.104 0.896 10 C -0.154 4.154 11 N -0.370 5.370 12 Si 0.740 3.260 13 H -0.194 1.194 14 H -0.202 1.202 15 H -0.186 1.186 16 N -0.143 5.143 17 O -0.284 6.284 18 H 0.076 0.924 19 H 0.083 0.917 20 H 0.081 0.919 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.101 0.899 24 H 0.104 0.896 25 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.058 -1.838 -4.623 5.840 hybrid contribution 0.047 0.864 -0.668 1.093 sum -3.010 -0.974 -5.291 6.165 Atomic orbital electron populations 1.21723 0.94512 1.01467 1.02790 1.22261 0.94745 0.84741 0.99748 1.87985 1.22771 1.26016 1.94454 1.24326 0.79836 0.95567 0.90191 0.90449 1.22766 1.01127 0.93632 0.99633 1.22175 0.93224 0.95123 0.88242 1.18560 1.46329 0.90128 0.92698 0.89584 1.26009 0.93587 0.99013 0.96840 1.69802 1.30856 1.32490 1.03804 0.86197 0.78991 0.81987 0.78830 1.19449 1.20211 1.18569 1.80020 1.36242 0.88912 1.09123 1.91112 1.80994 1.31812 1.24461 0.92387 0.91699 0.91889 0.94437 0.92923 0.89914 0.89621 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.28 37.16 0.38 -1.78 15 2 C 0.06 1.11 6.59 37.16 0.24 1.36 15 3 O -0.39 -8.80 10.35 -58.77 -0.61 -9.40 15 4 C 0.20 4.57 4.29 38.05 0.16 4.73 15 5 H 0.08 1.52 8.13 -51.93 -0.42 1.10 15 6 C -0.13 -3.04 6.77 -26.50 -0.18 -3.22 15 7 C 0.18 5.02 6.90 -81.97 -0.57 4.45 15 8 C -0.44 -11.89 9.40 -38.11 -0.36 -12.25 15 9 H 0.09 2.12 7.85 -52.48 -0.41 1.70 15 10 C 0.07 1.84 5.50 -17.25 -0.09 1.75 15 11 N -0.74 -21.13 11.91 55.58 0.66 -20.47 15 12 Si 0.92 19.05 29.56 -169.99 -5.03 14.03 15 13 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 14 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 15 H -0.26 -5.24 7.11 56.52 0.40 -4.84 15 16 N -0.37 -11.39 10.73 33.90 0.36 -11.03 15 17 O -0.28 -7.73 12.23 -34.92 -0.43 -8.16 15 18 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 19 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.06 0.99 8.14 -51.92 -0.42 0.56 15 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 15 22 H 0.05 1.01 8.02 -51.93 -0.42 0.60 15 23 H 0.08 1.77 8.11 -51.93 -0.42 1.35 15 24 H 0.09 1.75 8.14 -51.93 -0.42 1.32 15 25 H 0.28 7.15 8.29 -40.82 -0.34 6.81 15 LS Contribution 226.95 15.07 3.42 3.42 Total: -1.00 -32.53 226.95 -4.94 -37.47 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -2.92 Total: -0.89 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -0.41 Total: -4.96 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 1.03 Total: -31.50 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -1.04 Total: -17.57 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -32.53 -4.94 -37.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260659790.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.318 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds