Wall clock time and date at job start Mon Mar 30 2020 02:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42904 * 109.46964 * 2 1 4 4 C 1.42906 * 113.99577 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.82460 * 51.31168 * 4 3 2 6 6 C 1.54692 * 110.92792 * 174.99842 * 4 3 2 7 7 C 1.51696 * 102.64029 * 93.66572 * 6 4 3 8 8 C 1.39853 * 125.97730 * 195.11144 * 7 6 4 9 9 H 1.08004 * 119.99757 * 359.97438 * 8 7 6 10 10 C 1.40539 * 120.00217 * 180.02562 * 8 7 6 11 11 N 1.30510 * 119.99950 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00088 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47204 * 89.99581 * 12 10 8 14 14 H 1.48496 * 109.47206 * 209.99575 * 12 10 8 15 15 H 1.48502 * 109.46766 * 329.99740 * 12 10 8 16 16 N 1.30723 * 108.05280 * 15.38148 * 7 6 4 17 17 O 1.41413 * 112.52515 * 0.50830 * 16 7 6 18 18 H 1.08994 * 109.47098 * 59.99561 * 1 2 3 19 19 H 1.08992 * 109.47680 * 180.02562 * 1 2 3 20 20 H 1.09009 * 109.47059 * 300.00013 * 1 2 3 21 21 H 1.08996 * 109.46816 * 239.99836 * 2 1 3 22 22 H 1.09001 * 109.47036 * 120.00045 * 2 1 3 23 23 H 1.09000 * 110.77884 * 335.38224 * 6 4 3 24 24 H 1.09002 * 110.94069 * 212.02965 * 6 4 3 25 25 H 0.97000 * 120.00171 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8672 0.8560 -0.7961 6 6 3.8681 2.9386 -0.1265 7 6 4.0432 3.3574 1.3209 8 6 4.1436 4.6712 1.7897 9 1 4.0982 5.4973 1.0953 10 6 4.3047 4.9167 3.1640 11 7 4.3601 3.9185 4.0030 12 14 4.4382 6.6716 3.7902 13 1 3.0829 7.1875 4.1099 14 1 5.2792 6.6980 5.0137 15 1 5.0584 7.5243 2.7445 16 7 4.0896 2.2754 2.0530 17 8 3.9769 1.0949 1.2826 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8901 21 1 1.8933 -0.5138 -0.8899 22 1 1.8934 -0.5138 0.8900 23 1 3.0915 3.5317 -0.6093 24 1 4.8096 3.0216 -0.6696 25 1 4.4709 4.0879 4.9517 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260659790.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:48 Heat of formation + Delta-G solvation = -70.554647 kcal Electronic energy + Delta-G solvation = -11300.106803 eV Core-core repulsion = 9086.257879 eV Total energy + Delta-G solvation = -2213.848923 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.35801 -37.84271 -35.66670 -32.91493 -32.21836 -29.64295 -28.02348 -23.82672 -23.34749 -21.73490 -18.97281 -18.05487 -17.36646 -16.48534 -16.00323 -15.48991 -15.11661 -14.70881 -14.15630 -13.33832 -13.28697 -12.97967 -12.87453 -12.75692 -12.56399 -12.25468 -11.92947 -11.73478 -11.29928 -10.97979 -10.26590 -9.87926 -8.53768 -6.78302 1.36442 1.43496 1.60344 2.00766 2.23982 2.65360 3.15744 3.26837 3.95437 4.01709 4.12882 4.28113 4.46210 4.51758 4.61318 4.77945 4.88850 4.98188 5.07562 5.20533 5.32066 6.09677 6.25037 6.65080 6.82670 7.90216 8.42617 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.066669 B = 0.010327 C = 0.010182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.885668 B = 2710.684328 C = 2749.424298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 O -0.413 6.413 4 C 0.193 3.807 5 H 0.116 0.884 6 C -0.127 4.127 7 C 0.151 3.849 8 C -0.462 4.462 9 H 0.108 0.892 10 C 0.018 3.982 11 N -0.792 5.792 12 Si 1.004 2.996 13 H -0.262 1.262 14 H -0.272 1.272 15 H -0.244 1.244 16 N -0.429 5.429 17 O -0.300 6.300 18 H 0.069 0.931 19 H 0.098 0.902 20 H 0.044 0.956 21 H 0.068 0.932 22 H 0.030 0.970 23 H 0.096 0.904 24 H 0.111 0.889 25 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.443 -0.058 -6.838 7.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.335 6.335 4 C 0.096 3.904 5 H 0.133 0.867 6 C -0.166 4.166 7 C -0.014 4.014 8 C -0.501 4.501 9 H 0.126 0.874 10 C -0.202 4.202 11 N -0.419 5.419 12 Si 0.822 3.178 13 H -0.187 1.187 14 H -0.197 1.197 15 H -0.167 1.167 16 N -0.200 5.200 17 O -0.309 6.309 18 H 0.088 0.912 19 H 0.117 0.883 20 H 0.063 0.937 21 H 0.086 0.914 22 H 0.049 0.951 23 H 0.115 0.885 24 H 0.129 0.871 25 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.407 -0.732 -5.739 6.714 hybrid contribution 0.121 0.433 -0.379 0.588 sum -3.286 -0.299 -6.118 6.951 Atomic orbital electron populations 1.21735 0.91989 1.03618 1.02468 1.22589 0.96850 0.82890 1.00122 1.87947 1.22381 1.28750 1.94437 1.24654 0.80388 0.96225 0.89133 0.86672 1.22796 1.02888 0.93787 0.97141 1.22796 0.92426 0.95190 0.90969 1.19192 1.46315 0.90627 0.94010 0.87447 1.27243 0.91981 1.04282 0.96672 1.69950 1.31636 1.35741 1.04536 0.84893 0.79277 0.75171 0.78414 1.18717 1.19680 1.16716 1.79963 1.38476 0.90249 1.11359 1.91018 1.81844 1.31376 1.26646 0.91166 0.88328 0.93693 0.91399 0.95135 0.88511 0.87058 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 10.28 71.98 0.74 -3.14 15 2 C 0.05 1.79 6.59 71.98 0.47 2.26 15 3 O -0.41 -18.31 10.35 -126.48 -1.31 -19.62 15 4 C 0.19 8.74 4.29 72.56 0.31 9.05 15 5 H 0.12 4.27 8.13 -2.39 -0.02 4.25 15 6 C -0.13 -5.72 6.77 30.74 0.21 -5.51 15 7 C 0.15 8.55 6.90 43.43 0.30 8.85 15 8 C -0.46 -25.04 9.40 23.22 0.22 -24.82 15 9 H 0.11 5.14 7.85 -2.91 -0.02 5.11 15 10 C 0.02 0.96 5.50 85.45 0.47 1.43 15 11 N -0.79 -45.89 11.91 21.93 0.26 -45.63 15 12 Si 1.00 38.33 29.56 68.60 2.03 40.36 15 13 H -0.26 -9.68 7.11 99.48 0.71 -8.98 15 14 H -0.27 -10.07 7.11 99.48 0.71 -9.37 15 15 H -0.24 -8.57 7.11 99.48 0.71 -7.86 15 16 N -0.43 -26.94 10.73 -46.65 -0.50 -27.44 15 17 O -0.30 -17.10 12.23 -15.86 -0.19 -17.30 15 18 H 0.07 1.75 8.14 -2.39 -0.02 1.74 15 19 H 0.10 2.03 8.14 -2.39 -0.02 2.01 15 20 H 0.04 1.38 8.14 -2.38 -0.02 1.36 15 21 H 0.07 1.94 8.14 -2.39 -0.02 1.92 15 22 H 0.03 1.18 8.02 -2.39 -0.02 1.16 15 23 H 0.10 4.01 8.11 -2.39 -0.02 3.99 15 24 H 0.11 4.34 8.14 -2.39 -0.02 4.32 15 25 H 0.29 14.90 8.29 -92.71 -0.77 14.13 15 Total: -1.00 -71.91 226.95 4.18 -67.73 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.17 Total: 13.77 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 2.72 Total: -11.88 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -0.24 Total: -73.07 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -1.50 Total: -36.92 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -71.91 4.18 -67.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260659790.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.822 kcal (2) G-P(sol) polarization free energy of solvation -71.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds