Wall clock time and date at job start Mon Mar 30 2020 01:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76203 * 100.00190 * 2 1 4 4 C 1.36249 * 126.64349 * 179.97438 * 3 2 1 5 5 C 1.42570 * 103.84515 * 179.71844 * 4 3 2 6 6 C 1.41843 * 126.98646 * 180.28328 * 5 4 3 7 7 H 1.08000 * 120.00293 * 354.35788 * 6 5 4 8 8 C 1.39944 * 119.99820 * 174.36678 * 6 5 4 9 9 N 1.30776 * 119.99837 * 5.98075 * 8 6 5 10 10 Si 1.86802 * 119.99907 * 185.98877 * 8 6 5 11 11 H 1.48496 * 109.46838 * 94.97440 * 10 8 6 12 12 H 1.48495 * 109.46835 * 214.97743 * 10 8 6 13 13 H 1.48499 * 109.46951 * 334.97877 * 10 8 6 14 14 N 1.32242 * 106.02307 * 0.26227 * 5 4 3 15 15 O 1.20882 * 111.43005 * 359.97438 * 14 5 4 16 16 H 1.09004 * 109.47482 * 300.00578 * 1 2 3 17 17 H 1.09000 * 109.46826 * 59.99960 * 1 2 3 18 18 H 1.08993 * 109.47505 * 179.97438 * 1 2 3 19 19 H 1.07993 * 128.07492 * 359.97438 * 4 3 2 20 20 H 0.96994 * 119.99570 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.3338 2.3462 0.0005 5 6 3.0181 3.7365 -0.0066 6 6 3.9339 4.8196 -0.0146 7 1 4.9936 4.6315 0.0761 8 6 3.4645 6.1319 -0.1398 9 7 2.1786 6.3699 -0.1318 10 14 4.6746 7.5437 -0.3187 11 1 4.8671 7.8511 -1.7587 12 1 4.1423 8.7429 0.3767 13 1 5.9763 7.1591 0.2836 14 7 1.6977 3.8109 -0.0046 15 8 1.1934 2.7123 0.0019 16 1 -0.3634 0.5139 0.8899 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3634 -1.0276 -0.0005 19 1 4.3103 1.8850 0.0013 20 1 1.8532 7.2795 -0.2190 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260835955.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:03 Heat of formation + Delta-G solvation = 47.318034 kcal Electronic energy + Delta-G solvation = -9045.472994 eV Core-core repulsion = 7143.655190 eV Total energy + Delta-G solvation = -1901.817804 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 185.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.64585 -33.98110 -31.63090 -29.87131 -28.56400 -26.14551 -21.37503 -20.95419 -18.11654 -15.92166 -15.75935 -15.16979 -14.59469 -13.54459 -13.27254 -13.10630 -12.39201 -11.79921 -11.27892 -11.04451 -10.85372 -10.45804 -10.07570 -9.67254 -9.24868 -9.02818 -8.28217 -6.80616 -6.53570 -4.49571 2.01720 2.50459 2.85464 3.05176 3.14687 3.18983 4.03570 4.08102 5.25454 5.37073 5.40872 5.47489 5.97485 6.30822 6.72390 6.91259 7.12353 7.37347 8.33115 8.59618 8.93970 10.36354 10.48856 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.120699 B = 0.010319 C = 0.009564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 231.925543 B = 2712.802193 C = 2926.824888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.054 6.054 3 C -0.096 4.096 4 C -0.244 4.244 5 C 0.172 3.828 6 C -0.451 4.451 7 H 0.086 0.914 8 C 0.070 3.930 9 N -0.776 5.776 10 Si 0.915 3.085 11 H -0.271 1.271 12 H -0.278 1.278 13 H -0.263 1.263 14 N -0.402 5.402 15 O 0.050 5.950 16 H 0.085 0.915 17 H 0.085 0.915 18 H 0.099 0.901 19 H 0.144 0.856 20 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.758 -7.151 -0.111 7.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.178 5.822 3 C -0.272 4.272 4 C -0.274 4.274 5 C 0.026 3.974 6 C -0.489 4.489 7 H 0.104 0.896 8 C -0.150 4.150 9 N -0.404 5.404 10 Si 0.740 3.260 11 H -0.197 1.197 12 H -0.203 1.203 13 H -0.186 1.186 14 N -0.130 5.130 15 O -0.001 6.001 16 H 0.104 0.896 17 H 0.104 0.896 18 H 0.117 0.883 19 H 0.162 0.838 20 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.183 -7.069 -0.115 7.168 hybrid contribution 0.451 1.301 -0.103 1.381 sum -0.732 -5.768 -0.218 5.818 Atomic orbital electron populations 1.23449 0.95516 1.05976 1.06624 1.85203 1.06217 0.96237 1.94568 1.25732 0.93654 0.94816 1.12965 1.22343 0.96337 0.94054 1.14644 1.20411 0.89639 0.91306 0.95997 1.18702 0.93340 0.88758 1.48072 0.89609 1.25849 0.95642 1.00096 0.93386 1.69886 1.13743 1.21858 1.34911 0.86195 0.80916 0.79965 0.78960 1.19665 1.20345 1.18650 1.74694 1.10746 0.95684 1.31842 1.84981 1.33971 1.10195 1.70935 0.89593 0.89604 0.88282 0.83808 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.14 101.05 1.02 -0.99 14 2 S -0.05 -0.92 22.92 -107.50 -2.46 -3.39 14 3 C -0.10 -2.24 7.40 30.02 0.22 -2.01 14 4 C -0.24 -6.09 11.13 -38.63 -0.43 -6.52 14 5 C 0.17 4.99 6.81 -84.64 -0.58 4.41 14 6 C -0.45 -12.80 9.45 -37.57 -0.35 -13.16 14 7 H 0.09 2.26 7.85 -52.49 -0.41 1.85 14 8 C 0.07 1.91 5.49 -17.36 -0.10 1.82 14 9 N -0.78 -22.42 12.04 55.55 0.67 -21.75 14 10 Si 0.91 19.86 29.56 -169.99 -5.03 14.84 14 11 H -0.27 -5.79 7.11 56.52 0.40 -5.39 14 12 H -0.28 -5.91 7.11 56.52 0.40 -5.50 14 13 H -0.26 -5.52 7.11 56.52 0.40 -5.12 14 14 N -0.40 -11.94 10.46 32.31 0.34 -11.60 14 15 O 0.05 1.32 10.69 16.27 0.17 1.49 14 16 H 0.09 1.20 8.14 -51.91 -0.42 0.78 14 17 H 0.08 1.20 8.14 -51.92 -0.42 0.78 14 18 H 0.10 1.02 8.14 -51.92 -0.42 0.60 14 19 H 0.14 3.18 8.06 -52.49 -0.42 2.76 14 20 H 0.28 7.22 8.29 -40.82 -0.34 6.88 14 LS Contribution 206.04 15.07 3.11 3.11 Total: -1.00 -31.48 206.04 -4.65 -36.13 By element: Atomic # 1 Polarization: -1.13 SS G_CDS: -1.24 Total: -2.37 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -0.21 Total: -16.46 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 1.01 Total: -33.35 kcal Atomic # 8 Polarization: 1.32 SS G_CDS: 0.17 Total: 1.49 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.84 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.46 Total: -3.39 kcal Total LS contribution 3.11 Total: 3.11 kcal Total: -31.48 -4.65 -36.13 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260835955.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.449 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds