Wall clock time and date at job start Mon Mar 30 2020 01:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 110.70325 * 2 1 4 4 C 1.54598 * 110.79366 * 123.33079 * 2 1 3 5 5 C 1.51724 * 102.86938 * 93.11247 * 4 2 1 6 6 O 1.21287 * 126.24761 * 195.20768 * 5 4 2 7 7 N 1.34778 * 107.51373 * 15.20177 * 5 4 2 8 8 C 1.37092 * 124.16482 * 181.18546 * 7 5 4 9 9 H 1.08007 * 119.99851 * 8.64155 * 8 7 5 10 10 C 1.38949 * 120.00402 * 188.64695 * 8 7 5 11 11 N 1.31409 * 120.00319 * 194.90542 * 10 8 7 12 12 Si 1.86803 * 119.99832 * 14.90063 * 10 8 7 13 13 H 1.48501 * 109.47136 * 270.00258 * 12 10 8 14 14 H 1.48492 * 109.46994 * 30.00238 * 12 10 8 15 15 H 1.48501 * 109.47104 * 150.00113 * 12 10 8 16 16 O 1.41460 * 111.67292 * 1.44685 * 7 5 4 17 17 H 1.09001 * 109.47029 * 296.66837 * 1 2 3 18 18 H 1.08994 * 109.46983 * 56.66711 * 1 2 3 19 19 H 1.08996 * 109.46886 * 176.67066 * 1 2 3 20 20 H 1.09004 * 109.46907 * 183.33412 * 3 2 1 21 21 H 1.08999 * 109.46857 * 303.32826 * 3 2 1 22 22 H 1.08991 * 109.47102 * 63.33399 * 3 2 1 23 23 H 1.09005 * 110.73828 * 334.76562 * 4 2 1 24 24 H 1.09002 * 110.89021 * 211.52653 * 4 2 1 25 25 H 0.97008 * 119.99882 * 354.77486 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0710 1.4312 0.0000 4 6 2.0789 -0.7941 1.2076 5 6 2.2739 -2.1861 0.6361 6 8 2.4426 -3.2051 1.2719 7 7 2.2254 -2.0837 -0.7069 8 6 2.3403 -3.1468 -1.5647 9 1 2.3390 -4.1553 -1.1780 10 6 2.4585 -2.9271 -2.9316 11 7 2.2755 -3.9183 -3.7747 12 14 2.8775 -1.2226 -3.5708 13 1 1.6249 -0.4612 -3.8082 14 1 3.7083 -0.5085 -2.5683 15 1 3.6325 -1.3431 -4.8439 16 8 2.0474 -0.7433 -1.1225 17 1 -0.3633 0.4612 0.9183 18 1 -0.3633 0.5647 -0.8586 19 1 -0.3633 -1.0259 -0.0597 20 1 3.1591 1.4084 -0.0598 21 1 1.6712 1.9707 -0.8587 22 1 1.7680 1.9341 0.9183 23 1 1.3538 -0.8092 2.0214 24 1 3.0284 -0.3796 1.5463 25 1 2.1329 -4.8182 -3.4418 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260858767.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:25 Heat of formation + Delta-G solvation = -54.252564 kcal Electronic energy + Delta-G solvation = -11879.668861 eV Core-core repulsion = 9666.526849 eV Total energy + Delta-G solvation = -2213.142012 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.58385 -38.38350 -36.12684 -34.27027 -32.50139 -29.79698 -28.32702 -25.98190 -22.28578 -21.23452 -20.46183 -17.84278 -17.38538 -16.77635 -16.24306 -15.63367 -15.24297 -14.68867 -14.55145 -14.29677 -13.83295 -13.28483 -13.04786 -12.71124 -12.60583 -12.37412 -11.90903 -11.76373 -11.35416 -11.24193 -10.68617 -9.98697 -9.19007 -6.31311 1.11727 1.37732 1.48746 1.74379 1.93248 2.33842 2.95242 3.18072 3.52865 3.78489 3.85407 4.05909 4.60393 4.63750 4.75796 4.84060 4.92140 5.09340 5.19007 5.34708 5.38021 5.71555 6.05616 6.68331 7.02505 7.56940 8.26037 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.039854 B = 0.021120 C = 0.015780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.389392 B = 1325.436935 C = 1773.936273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.059 3.941 3 C -0.131 4.131 4 C -0.149 4.149 5 C 0.424 3.576 6 O -0.614 6.614 7 N -0.328 5.328 8 C -0.408 4.408 9 H 0.076 0.924 10 C -0.016 4.016 11 N -0.891 5.891 12 Si 1.120 2.880 13 H -0.266 1.266 14 H -0.251 1.251 15 H -0.285 1.285 16 O -0.175 6.175 17 H 0.110 0.890 18 H 0.075 0.925 19 H 0.030 0.970 20 H 0.066 0.934 21 H 0.076 0.924 22 H 0.117 0.883 23 H 0.129 0.871 24 H 0.127 0.873 25 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.072 15.129 6.011 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 C -0.189 4.189 4 C -0.189 4.189 5 C 0.214 3.786 6 O -0.502 6.502 7 N -0.094 5.094 8 C -0.532 4.532 9 H 0.094 0.906 10 C -0.219 4.219 11 N -0.525 5.525 12 Si 0.942 3.058 13 H -0.192 1.192 14 H -0.176 1.176 15 H -0.212 1.212 16 O -0.179 6.179 17 H 0.129 0.871 18 H 0.094 0.906 19 H 0.049 0.951 20 H 0.085 0.915 21 H 0.095 0.905 22 H 0.135 0.865 23 H 0.147 0.853 24 H 0.145 0.855 25 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.775 15.519 4.632 16.293 hybrid contribution -0.373 -2.002 1.266 2.397 sum -2.148 13.517 5.898 14.903 Atomic orbital electron populations 1.22202 0.92492 1.01815 1.05035 1.23441 0.95822 0.94488 0.84196 1.21917 1.01945 0.89630 1.05410 1.23013 1.05885 0.90776 0.99222 1.21399 0.83366 0.92527 0.81310 1.90551 1.58622 1.37196 1.63818 1.46016 1.62137 0.95858 1.05346 1.20573 1.57069 0.84720 0.90843 0.90614 1.27822 0.92520 1.10066 0.91492 1.70922 1.42944 1.01856 1.36826 0.82873 0.78578 0.69205 0.75184 1.19182 1.17625 1.21201 1.90755 1.86580 1.06624 1.33896 0.87103 0.90554 0.95097 0.91466 0.90474 0.86501 0.85318 0.85492 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 8.95 71.98 0.64 -3.61 15 2 C 0.06 1.80 1.32 -10.25 -0.01 1.79 15 3 C -0.13 -2.66 8.94 71.98 0.64 -2.01 15 4 C -0.15 -4.83 6.13 30.72 0.19 -4.64 15 5 C 0.42 21.12 8.15 87.98 0.72 21.84 15 6 O -0.61 -35.77 17.70 -3.05 -0.05 -35.83 15 7 N -0.33 -17.49 3.62 -305.93 -1.11 -18.60 15 8 C -0.41 -25.03 10.27 84.04 0.86 -24.17 15 9 H 0.08 5.17 7.96 -2.91 -0.02 5.15 15 10 C -0.02 -0.96 5.50 84.93 0.47 -0.49 15 11 N -0.89 -54.69 13.69 21.66 0.30 -54.39 15 12 Si 1.12 52.26 26.19 68.60 1.80 54.06 15 13 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 14 H -0.25 -10.93 6.50 99.48 0.65 -10.28 15 15 H -0.28 -12.84 7.11 99.48 0.71 -12.13 15 16 O -0.17 -7.67 6.65 -38.47 -0.26 -7.92 15 17 H 0.11 2.02 8.14 -2.39 -0.02 2.00 15 18 H 0.08 1.88 8.14 -2.39 -0.02 1.87 15 19 H 0.03 1.03 8.14 -2.39 -0.02 1.01 15 20 H 0.07 1.41 8.14 -2.38 -0.02 1.39 15 21 H 0.08 1.44 8.14 -2.39 -0.02 1.42 15 22 H 0.12 1.45 8.14 -2.39 -0.02 1.43 15 23 H 0.13 3.39 7.91 -2.38 -0.02 3.37 15 24 H 0.13 3.44 7.92 -2.39 -0.02 3.42 15 25 H 0.26 16.29 8.73 -92.70 -0.81 15.48 15 Total: -1.00 -76.00 219.20 5.26 -70.74 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.07 Total: 3.23 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 3.51 Total: -11.29 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -0.81 Total: -72.98 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -0.31 Total: -43.75 kcal Atomic # 14 Polarization: 52.26 SS G_CDS: 1.80 Total: 54.06 kcal Total: -76.00 5.26 -70.74 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260858767.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.491 kcal (2) G-P(sol) polarization free energy of solvation -76.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds