Wall clock time and date at job start Mon Mar 30 2020 02:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48501 * 109.46996 * 269.99985 * 3 2 1 5 5 H 1.48498 * 109.47147 * 30.00077 * 3 2 1 6 6 H 1.48505 * 109.47057 * 150.00007 * 3 2 1 7 7 C 1.37882 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99786 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99726 * 0.02562 * 7 2 1 10 10 F 1.39903 * 110.73253 * 308.22618 * 9 7 2 11 11 C 1.54658 * 110.66791 * 185.12424 * 9 7 2 12 12 N 1.49520 * 105.36773 * 242.27306 * 11 9 7 13 13 C 1.49526 * 105.92194 * 71.21391 * 12 11 9 14 14 C 1.54656 * 105.28330 * 288.73680 * 13 12 11 15 15 C 1.56245 * 103.21535 * 359.34632 * 14 13 12 16 16 H 1.09001 * 116.68822 * 201.04322 * 15 14 13 17 17 C 1.50464 * 102.03444 * 324.80350 * 12 11 9 18 18 H 0.97001 * 119.99690 * 359.97438 * 1 2 3 19 19 H 1.09003 * 110.28322 * 123.27752 * 11 9 7 20 20 H 1.09002 * 110.28450 * 1.27528 * 11 9 7 21 21 H 1.08997 * 110.28024 * 47.69377 * 13 12 11 22 22 H 1.08998 * 110.27803 * 169.78419 * 13 12 11 23 23 H 1.08995 * 110.67123 * 240.91115 * 14 13 12 24 24 H 1.09005 * 110.66387 * 117.77370 * 14 13 12 25 25 H 1.09002 * 111.90701 * 171.59789 * 17 12 11 26 26 H 1.08996 * 111.90842 * 297.73542 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 9 0.3018 -2.5229 1.0280 11 6 2.2261 -3.6925 0.1304 12 7 2.0571 -4.4811 -1.1286 13 6 2.6734 -3.6580 -2.2141 14 6 1.7104 -2.4650 -2.4176 15 6 0.5706 -2.7460 -1.3866 16 1 -0.3865 -2.2575 -1.5696 17 6 0.5874 -4.3173 -1.4065 18 1 -0.4850 0.8401 0.0004 19 1 1.9646 -4.3017 0.9957 20 1 3.2520 -3.3345 0.2172 21 1 3.6565 -3.3018 -1.9063 22 1 2.7521 -4.2408 -3.1318 23 1 1.3167 -2.4574 -3.4340 24 1 2.2110 -1.5236 -2.1908 25 1 0.3115 -4.7146 -2.3833 26 1 -0.0265 -4.7418 -0.6123 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260872072.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:50 Heat of formation + Delta-G solvation = -48.346190 kcal Electronic energy + Delta-G solvation = -12081.411588 eV Core-core repulsion = 9880.898485 eV Total energy + Delta-G solvation = -2200.513103 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.091 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -47.68441 -40.98942 -34.80504 -31.17421 -30.72306 -29.27266 -26.34045 -22.72312 -21.97057 -20.32808 -18.72275 -17.17500 -16.81119 -16.45466 -15.67046 -14.90197 -14.54181 -14.39362 -13.74495 -13.53961 -12.90781 -12.77908 -12.55864 -12.42832 -12.12607 -11.99482 -11.90972 -11.64139 -11.07128 -10.76740 -10.46565 -9.72807 -8.19789 -6.39023 1.38861 1.40799 1.50518 2.35897 3.07623 3.16504 3.88872 3.90993 4.18509 4.24077 4.43811 4.53802 4.58516 4.75494 4.87206 4.97492 5.06390 5.21403 5.34594 5.39972 5.48600 5.63108 5.75144 5.89239 6.15883 6.62818 7.33285 8.85807 Molecular weight = 185.09amu Principal moments of inertia in cm(-1) A = 0.053445 B = 0.017738 C = 0.016089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.780275 B = 1578.135866 C = 1739.927738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.029 3.971 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.555 4.555 8 H 0.067 0.933 9 C 0.197 3.803 10 F -0.246 7.246 11 C 0.001 3.999 12 N -0.468 5.468 13 C 0.020 3.980 14 C -0.132 4.132 15 C -0.132 4.132 16 H 0.077 0.923 17 C 0.007 3.993 18 H 0.263 0.737 19 H 0.070 0.930 20 H 0.080 0.920 21 H 0.072 0.928 22 H 0.098 0.902 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.103 0.897 26 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.585 -4.076 -4.665 7.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.174 4.174 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.592 4.592 8 H 0.085 0.915 9 C 0.177 3.823 10 F -0.227 7.227 11 C -0.128 4.128 12 N -0.189 5.189 13 C -0.108 4.108 14 C -0.170 4.170 15 C -0.152 4.152 16 H 0.095 0.905 17 C -0.121 4.121 18 H 0.072 0.928 19 H 0.089 0.911 20 H 0.099 0.901 21 H 0.091 0.909 22 H 0.117 0.883 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.121 0.879 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.702 -4.694 -4.589 7.536 hybrid contribution -0.335 1.966 0.355 2.025 sum 3.367 -2.728 -4.234 6.058 Atomic orbital electron populations 1.70155 1.07506 1.27610 1.48224 1.25809 0.95545 1.02707 0.93326 0.85569 0.78722 0.78862 0.78632 1.19328 1.21195 1.19005 1.21485 0.93223 0.90640 1.53895 0.91464 1.20476 0.84335 0.94949 0.82506 1.92659 1.68913 1.97708 1.63381 1.24150 1.00453 0.93670 0.94573 1.69947 1.07572 1.38993 1.02355 1.23559 0.98026 0.93198 0.96037 1.23085 0.96215 1.00217 0.97532 1.24547 0.98179 0.95307 0.97200 0.90463 1.24595 0.90686 0.94768 1.02089 0.92793 0.91133 0.90113 0.90916 0.88331 0.91422 0.91024 0.87912 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.97 12.40 21.45 0.27 -51.70 15 2 C 0.03 1.57 5.35 84.66 0.45 2.02 15 3 Si 0.96 42.37 29.54 68.60 2.03 44.40 15 4 H -0.27 -11.35 7.11 99.48 0.71 -10.65 15 5 H -0.29 -12.67 7.11 99.48 0.71 -11.96 15 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 7 C -0.55 -29.50 6.05 25.60 0.15 -29.35 15 8 H 0.07 3.46 7.40 -2.91 -0.02 3.44 15 9 C 0.20 9.90 0.89 -9.77 -0.01 9.90 15 10 F -0.25 -14.13 16.10 44.97 0.72 -13.41 15 11 C 0.00 0.04 6.10 86.36 0.53 0.57 15 12 N -0.47 -17.56 6.94 -856.46 -5.94 -23.51 15 13 C 0.02 0.69 6.61 86.36 0.57 1.26 15 14 C -0.13 -5.17 6.12 32.29 0.20 -4.97 15 15 C -0.13 -5.94 4.64 -7.00 -0.03 -5.98 15 16 H 0.08 3.88 8.14 -2.39 -0.02 3.86 15 17 C 0.01 0.27 6.75 87.06 0.59 0.86 15 18 H 0.26 14.46 8.31 -92.71 -0.77 13.69 15 19 H 0.07 2.97 8.06 -2.39 -0.02 2.95 15 20 H 0.08 3.36 7.02 -2.39 -0.02 3.34 15 21 H 0.07 2.43 7.69 -2.39 -0.02 2.41 15 22 H 0.10 2.75 8.14 -2.39 -0.02 2.73 15 23 H 0.07 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.07 3.17 6.19 -2.38 -0.01 3.15 15 25 H 0.10 3.24 8.14 -2.39 -0.02 3.22 15 26 H 0.07 2.73 8.14 -2.39 -0.02 2.71 15 Total: -1.00 -60.07 214.19 0.69 -59.38 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 1.16 Total: 10.51 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 2.45 Total: -25.68 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -5.68 Total: -75.21 kcal Atomic # 9 Polarization: -14.13 SS G_CDS: 0.72 Total: -13.41 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -60.07 0.69 -59.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260872072.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.038 kcal (2) G-P(sol) polarization free energy of solvation -60.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds