Wall clock time and date at job start Mon Mar 30 2020 01:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 110.69905 * 2 1 4 4 C 1.54600 * 110.78877 * 123.32295 * 2 1 3 5 5 C 1.51722 * 102.86289 * 143.61385 * 4 2 1 6 6 O 1.21280 * 126.24181 * 164.79840 * 5 4 2 7 7 N 1.34772 * 107.51591 * 344.79427 * 5 4 2 8 8 C 1.46503 * 124.16494 * 178.82248 * 7 5 4 9 9 C 1.50699 * 109.46825 * 74.99799 * 8 7 5 10 10 H 1.07999 * 120.00803 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99889 * 180.02562 * 9 8 7 12 12 N 1.31520 * 120.00186 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00030 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00044 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00037 * 13 11 9 17 17 O 1.41464 * 111.67709 * 359.08837 * 7 5 4 18 18 H 1.08999 * 109.47231 * 296.67833 * 1 2 3 19 19 H 1.09008 * 109.47080 * 56.67444 * 1 2 3 20 20 H 1.09004 * 109.46971 * 176.67167 * 1 2 3 21 21 H 1.08996 * 110.73648 * 25.26863 * 4 2 1 22 22 H 1.09002 * 110.88995 * 262.02858 * 4 2 1 23 23 H 1.09004 * 109.46958 * 315.00210 * 8 7 5 24 24 H 1.08997 * 109.47731 * 194.99886 * 8 7 5 25 25 H 0.96998 * 120.00124 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9153 1.0197 0.0000 4 6 2.0788 -0.7940 1.2077 5 6 3.3119 -1.4685 0.6364 6 8 4.2054 -1.9865 1.2722 7 7 3.2333 -1.3871 -0.7066 8 6 4.2527 -1.9038 -1.6232 9 6 4.1562 -3.4063 -1.6863 10 1 3.4100 -3.9247 -1.1024 11 6 5.0207 -4.1195 -2.4895 12 7 4.9362 -5.4308 -2.5450 13 14 6.3119 -3.2233 -3.4989 14 1 7.5578 -3.0890 -2.7021 15 1 5.8083 -1.8741 -3.8613 16 1 6.5962 -3.9942 -4.7359 17 8 2.0481 -0.7360 -1.1221 18 1 -0.3634 0.4614 0.9182 19 1 -0.3634 0.5646 -0.8587 20 1 -0.3633 -1.0260 -0.0597 21 1 1.3539 -1.5355 1.5435 22 1 2.3488 -0.1234 2.0235 23 1 5.2417 -1.6179 -1.2651 24 1 4.0919 -1.4873 -2.6176 25 1 5.5446 -5.9326 -3.1098 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260879478.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:14 Heat of formation + Delta-G solvation = -49.840286 kcal Electronic energy + Delta-G solvation = -11380.934060 eV Core-core repulsion = 9167.983379 eV Total energy + Delta-G solvation = -2212.950681 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.44054 -38.52741 -35.80128 -34.16460 -32.63106 -30.69563 -28.04914 -24.51022 -22.85943 -21.46363 -19.26846 -18.05091 -18.03510 -16.71458 -16.42209 -15.78150 -15.30075 -14.65553 -14.61849 -14.00999 -13.94394 -13.63254 -13.10630 -12.89642 -12.60098 -12.43708 -12.16799 -11.82570 -11.57518 -10.92343 -10.83860 -9.55040 -8.39606 -6.48946 1.05323 1.34098 1.37753 1.45160 1.47912 2.27999 2.90172 3.02661 3.44261 3.68351 4.01448 4.23488 4.55449 4.59361 4.65147 4.72812 4.95157 5.05915 5.24113 5.28812 5.35600 6.11944 6.40380 6.51567 6.99292 7.16382 8.77859 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.058866 B = 0.011724 C = 0.011194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.539382 B = 2387.726995 C = 2500.773862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 H 0.110 0.890 4 C -0.164 4.164 5 C 0.486 3.514 6 O -0.564 6.564 7 N -0.475 5.475 8 C 0.248 3.752 9 C -0.554 4.554 10 H 0.023 0.977 11 C 0.013 3.987 12 N -0.942 5.942 13 Si 0.956 3.044 14 H -0.264 1.264 15 H -0.235 1.235 16 H -0.271 1.271 17 O -0.170 6.170 18 H 0.113 0.887 19 H 0.077 0.923 20 H 0.056 0.944 21 H 0.124 0.876 22 H 0.145 0.855 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.156 14.441 3.365 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.009 4.009 3 H 0.128 0.872 4 C -0.204 4.204 5 C 0.275 3.725 6 O -0.444 6.444 7 N -0.252 5.252 8 C 0.129 3.871 9 C -0.592 4.592 10 H 0.041 0.959 11 C -0.186 4.186 12 N -0.581 5.581 13 Si 0.776 3.224 14 H -0.189 1.189 15 H -0.158 1.158 16 H -0.196 1.196 17 O -0.174 6.174 18 H 0.132 0.868 19 H 0.096 0.904 20 H 0.075 0.925 21 H 0.142 0.858 22 H 0.162 0.838 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.684 13.988 3.315 15.853 hybrid contribution 0.495 -0.459 -0.345 0.758 sum -6.190 13.529 2.970 15.171 Atomic orbital electron populations 1.21926 0.89089 1.03525 1.05180 1.23817 0.97872 0.95924 0.83249 0.87214 1.23201 0.94847 1.01936 1.00429 1.21849 0.88878 0.80007 0.81735 1.90699 1.41245 1.48467 1.63949 1.50572 1.13571 1.54675 1.06410 1.19564 0.84677 0.92541 0.90274 1.21476 1.18622 0.91452 1.27682 0.95863 1.25930 0.99545 0.95666 0.97445 1.70045 1.39567 1.07908 1.40588 0.85614 0.78608 0.79977 0.78185 1.18911 1.15846 1.19603 1.90899 1.28855 1.65207 1.32410 0.86843 0.90434 0.92457 0.85805 0.83753 0.93735 0.91944 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.60 71.98 0.69 -1.63 15 2 C 0.05 1.17 4.37 31.14 0.14 1.30 15 3 H 0.11 2.08 8.14 -2.38 -0.02 2.06 15 4 C -0.16 -4.40 6.60 30.72 0.20 -4.20 15 5 C 0.49 21.13 8.09 87.98 0.71 21.85 15 6 O -0.56 -29.57 17.81 -3.03 -0.05 -29.62 15 7 N -0.47 -21.70 3.72 -465.60 -1.73 -23.43 15 8 C 0.25 12.64 5.05 85.63 0.43 13.08 15 9 C -0.55 -34.24 9.82 25.60 0.25 -33.99 15 10 H 0.02 1.63 8.06 -2.91 -0.02 1.61 15 11 C 0.01 0.77 5.47 84.65 0.46 1.23 15 12 N -0.94 -60.56 13.96 21.45 0.30 -60.27 15 13 Si 0.96 43.77 27.47 68.60 1.88 45.65 15 14 H -0.26 -11.76 7.11 99.48 0.71 -11.05 15 15 H -0.24 -9.64 6.54 99.48 0.65 -8.99 15 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 17 O -0.17 -6.35 12.07 -38.48 -0.46 -6.82 15 18 H 0.11 1.10 8.14 -2.39 -0.02 1.08 15 19 H 0.08 1.17 8.14 -2.38 -0.02 1.15 15 20 H 0.06 1.12 8.14 -2.39 -0.02 1.10 15 21 H 0.12 3.01 7.91 -2.39 -0.02 2.99 15 22 H 0.14 2.80 8.14 -2.39 -0.02 2.78 15 23 H 0.04 2.24 7.57 -2.39 -0.02 2.22 15 24 H 0.06 2.95 7.20 -2.39 -0.02 2.94 15 25 H 0.27 16.08 8.31 -92.71 -0.77 15.31 15 Total: -1.00 -78.78 224.53 3.94 -74.84 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: 1.12 Total: 2.00 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 2.89 Total: -2.36 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -1.43 Total: -83.69 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -0.52 Total: -36.44 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.65 kcal Total: -78.78 3.94 -74.84 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260879478.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.995 kcal (2) G-P(sol) polarization free energy of solvation -78.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds