Wall clock time and date at job start Mon Mar 30 2020 01:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 O 1.41044 * 118.50500 * 254.73298 * 10 9 7 12 12 C 1.43057 * 114.78242 * 161.10493 * 11 10 9 13 13 C 1.53358 * 108.52142 * 50.61940 * 12 11 10 14 14 C 1.53180 * 108.40964 * 293.89861 * 13 12 11 15 15 C 1.33845 * 118.50320 * 74.99961 * 10 9 7 16 16 O 1.21285 * 118.90671 * 1.51522 * 15 10 9 17 17 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 19 19 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 20 20 H 1.09000 * 109.83251 * 290.82092 * 12 11 10 21 21 H 1.09002 * 109.66322 * 170.32043 * 12 11 10 22 22 H 1.09004 * 109.67296 * 174.16753 * 13 12 11 23 23 H 1.08995 * 109.70595 * 53.65029 * 13 12 11 24 24 H 1.08999 * 109.48757 * 287.91635 * 14 13 12 25 25 H 1.09004 * 109.49139 * 167.88601 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 8 2.3922 -4.3364 -1.1952 12 6 3.6002 -5.1009 -1.2486 13 6 3.6977 -5.9474 0.0265 14 6 3.8681 -5.0044 1.2215 15 6 2.8494 -3.9003 1.1367 16 8 2.6054 -3.2498 2.1308 17 1 -0.4850 0.8401 0.0004 18 1 0.6239 -2.5567 0.8903 19 1 0.6246 -2.5571 -0.8897 20 1 4.4587 -4.4320 -1.3100 21 1 3.5826 -5.7542 -2.1209 22 1 4.5575 -6.6141 -0.0406 23 1 2.7872 -6.5340 0.1487 24 1 4.8703 -4.5760 1.2066 25 1 3.7245 -5.5611 2.1475 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260893874.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:09 Heat of formation + Delta-G solvation = -32.724414 kcal Electronic energy + Delta-G solvation = -11520.367958 eV Core-core repulsion = 9308.159477 eV Total energy + Delta-G solvation = -2212.208481 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.49080 -36.77819 -33.95368 -32.61077 -31.39306 -27.67042 -25.77744 -23.41832 -22.01736 -18.96206 -16.76190 -16.62247 -16.06217 -15.13568 -14.49958 -14.18047 -13.97110 -13.41773 -12.97062 -12.26866 -11.98744 -11.49394 -11.13577 -10.98517 -10.88014 -10.58791 -10.49871 -10.17920 -9.55686 -8.85500 -8.42720 -7.62348 -6.03147 -4.06726 2.77977 3.33608 3.37578 3.39570 3.45972 4.46350 4.52763 4.83285 4.93500 5.05000 5.32115 5.43667 5.64480 5.70418 5.84597 6.10314 6.23266 7.08082 7.28409 7.42531 7.91888 8.17306 8.53898 8.87951 9.01864 9.56185 11.05497 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.059866 B = 0.011989 C = 0.011583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.599824 B = 2334.840649 C = 2416.767881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.061 3.939 3 Si 0.903 3.097 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.261 3.739 10 N -0.449 5.449 11 O -0.162 6.162 12 C 0.031 3.969 13 C -0.153 4.153 14 C -0.141 4.141 15 C 0.492 3.508 16 O -0.530 6.530 17 H 0.264 0.736 18 H 0.054 0.946 19 H 0.046 0.954 20 H 0.061 0.939 21 H 0.109 0.891 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.102 -10.185 -1.944 12.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.144 3.856 10 N -0.229 5.229 11 O -0.164 6.164 12 C -0.047 4.047 13 C -0.192 4.192 14 C -0.181 4.181 15 C 0.279 3.721 16 O -0.408 6.408 17 H 0.074 0.926 18 H 0.072 0.928 19 H 0.064 0.936 20 H 0.079 0.921 21 H 0.127 0.873 22 H 0.100 0.900 23 H 0.096 0.904 24 H 0.113 0.887 25 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.663 -9.722 -1.611 11.896 hybrid contribution 0.768 0.730 -0.143 1.069 sum 7.431 -8.993 -1.754 11.797 Atomic orbital electron populations 1.69928 1.05965 1.27147 1.50541 1.24900 0.94948 0.99192 0.95030 0.86413 0.79818 0.82726 0.77989 1.20601 1.20990 1.19855 1.21362 0.93393 0.90276 1.51004 0.92420 1.19520 0.86790 0.80201 0.99046 1.50334 1.43010 1.30451 0.99118 1.90411 1.39851 1.62029 1.24065 1.23068 0.88952 0.94147 0.98524 1.22228 1.03557 0.98480 0.94888 1.21805 0.99777 0.96206 1.00300 1.20155 0.83304 0.85774 0.82867 1.90759 1.65003 1.52024 1.32980 0.92616 0.92835 0.93600 0.92099 0.87294 0.90048 0.90360 0.88670 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 15 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 15 3 Si 0.90 22.46 29.54 -169.99 -5.02 17.44 15 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 5 H -0.28 -6.94 7.11 56.52 0.40 -6.53 15 6 H -0.27 -6.80 7.11 56.52 0.40 -6.39 15 7 C -0.52 -15.49 8.84 -34.44 -0.30 -15.79 15 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 15 9 C 0.26 7.23 5.30 -5.19 -0.03 7.20 15 10 N -0.45 -10.57 3.65 -61.79 -0.23 -10.79 15 11 O -0.16 -3.26 11.54 -11.20 -0.13 -3.39 15 12 C 0.03 0.43 7.06 37.34 0.26 0.69 15 13 C -0.15 -1.86 6.22 -26.45 -0.16 -2.03 15 14 C -0.14 -2.13 6.12 -27.90 -0.17 -2.30 15 15 C 0.49 10.92 7.32 -11.51 -0.08 10.84 15 16 O -0.53 -14.04 16.34 5.55 0.09 -13.95 15 17 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 18 H 0.05 1.60 7.74 -51.93 -0.40 1.20 15 19 H 0.05 1.30 8.12 -51.93 -0.42 0.87 15 20 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.11 1.14 8.14 -51.93 -0.42 0.71 15 22 H 0.08 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.08 0.96 8.14 -51.93 -0.42 0.53 15 24 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 25 H 0.10 1.32 8.14 -51.93 -0.42 0.90 15 LS Contribution 222.82 15.07 3.36 3.36 Total: -1.00 -33.76 222.82 -4.68 -38.44 By element: Atomic # 1 Polarization: -2.09 SS G_CDS: -2.90 Total: -4.99 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.58 Total: 0.31 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.51 Total: -37.21 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.04 Total: -17.34 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -33.76 -4.68 -38.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260893874.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.714 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds