Wall clock time and date at job start Mon Mar 30 2020 02:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47000 * 54.99344 * 10 9 7 12 12 N 1.46904 * 109.47145 * 295.00024 * 10 9 7 13 13 C 1.52993 * 109.47360 * 175.00112 * 10 9 7 14 14 H 1.09000 * 109.87256 * 58.99081 * 13 10 9 15 15 C 1.54101 * 109.87944 * 179.97438 * 13 10 9 16 16 C 1.54807 * 104.18403 * 121.45447 * 15 13 10 17 17 C 1.54996 * 102.09738 * 20.87852 * 16 15 13 18 18 O 1.43745 * 109.87650 * 297.83230 * 13 10 9 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 21 21 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 22 22 H 1.00892 * 111.00190 * 176.04744 * 12 10 9 23 23 H 1.00901 * 110.99866 * 300.00464 * 12 10 9 24 24 H 1.08996 * 110.48531 * 240.12481 * 15 13 10 25 25 H 1.08997 * 110.48843 * 2.64153 * 15 13 10 26 26 H 1.09010 * 110.91107 * 139.08219 * 16 15 13 27 27 H 1.09009 * 110.90793 * 262.67726 * 16 15 13 28 28 H 1.08997 * 110.61590 * 81.48043 * 17 16 15 29 29 H 1.09000 * 110.62003 * 204.31633 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9294 -3.5551 0.8412 12 7 3.0084 -3.6539 -1.2558 13 6 1.4845 -4.9835 0.1252 14 1 0.7852 -5.0888 -0.7043 15 6 2.4775 -6.1619 0.1255 16 6 2.2107 -6.8825 1.4693 17 6 0.7820 -6.3951 1.8212 18 8 0.7747 -5.0219 1.3745 19 1 -0.4849 0.8400 0.0004 20 1 0.6248 -2.5571 0.8897 21 1 0.6240 -2.5567 -0.8903 22 1 3.7160 -4.3731 -1.2535 23 1 2.3961 -3.7517 -2.0518 24 1 2.2769 -6.8300 -0.7120 25 1 3.5035 -5.7962 0.0834 26 1 2.2320 -7.9649 1.3414 27 1 2.9270 -6.5679 2.2284 28 1 0.0344 -6.9776 1.2828 29 1 0.6106 -6.4527 2.8961 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260916832.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:44 Heat of formation + Delta-G solvation = -58.351903 kcal Electronic energy + Delta-G solvation = -11592.415699 eV Core-core repulsion = 9514.929020 eV Total energy + Delta-G solvation = -2077.486678 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.24057 -35.07978 -32.41453 -31.66809 -28.44160 -27.97623 -24.15641 -22.21964 -20.92828 -19.70205 -16.38148 -16.00177 -15.53565 -15.35513 -14.50178 -14.15707 -13.41559 -12.99531 -12.56419 -12.17464 -11.55178 -11.31314 -11.07976 -10.99446 -10.82256 -10.48569 -10.38003 -10.07031 -9.38179 -9.15448 -8.96128 -8.17955 -7.83821 -5.79888 -3.77973 3.46814 3.49616 3.53669 4.20284 4.62671 4.74376 4.92840 5.12392 5.33737 5.40046 5.48175 5.59072 5.77355 5.79211 5.88684 5.96980 6.06165 6.22951 6.61375 6.90538 7.34707 7.74078 7.83437 8.11001 8.19151 8.25171 8.66829 9.28064 9.82839 11.32141 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.067663 B = 0.009832 C = 0.009161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.716640 B = 2847.134395 C = 3055.853210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.049 3.951 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.492 4.492 8 H 0.059 0.941 9 C 0.034 3.966 10 C 0.099 3.901 11 H 0.073 0.927 12 N -0.818 5.818 13 C 0.043 3.957 14 H 0.058 0.942 15 C -0.156 4.156 16 C -0.153 4.153 17 C 0.042 3.958 18 O -0.357 6.357 19 H 0.257 0.743 20 H 0.029 0.971 21 H 0.011 0.989 22 H 0.318 0.682 23 H 0.334 0.666 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 -13.145 0.698 13.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.150 4.150 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.531 4.531 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.012 4.012 11 H 0.091 0.909 12 N -0.347 5.347 13 C -0.017 4.017 14 H 0.076 0.924 15 C -0.194 4.194 16 C -0.191 4.191 17 C -0.035 4.035 18 O -0.275 6.275 19 H 0.067 0.933 20 H 0.047 0.953 21 H 0.029 0.971 22 H 0.130 0.870 23 H 0.146 0.854 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.644 -12.084 1.021 12.663 hybrid contribution 0.092 -0.336 -0.295 0.457 sum 3.736 -12.421 0.726 12.991 Atomic orbital electron populations 1.69972 1.05988 1.26251 1.52242 1.25023 0.94788 0.99074 0.96124 0.86666 0.79454 0.83402 0.78438 1.20409 1.21665 1.20513 1.21161 0.93226 0.90383 1.48318 0.92250 1.19095 0.93002 0.90903 0.97371 1.21806 0.95397 0.92414 0.91630 0.90883 1.58951 1.17739 1.53851 1.04161 1.23928 0.92954 0.97716 0.87084 0.92414 1.23069 1.01104 0.97610 0.97636 1.23100 0.98186 1.00114 0.97671 1.23506 0.95473 0.84427 1.00131 1.89041 1.76146 1.24634 1.37662 0.93324 0.95307 0.97053 0.87023 0.85387 0.91462 0.90459 0.90885 0.90608 0.92906 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.41 13.29 55.43 0.74 -27.68 15 2 C 0.05 1.48 5.46 -17.82 -0.10 1.38 15 3 Si 0.89 22.81 29.54 -169.99 -5.02 17.79 15 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 15 5 H -0.29 -7.35 7.11 56.52 0.40 -6.94 15 6 H -0.28 -7.02 7.11 56.52 0.40 -6.62 15 7 C -0.49 -14.55 8.84 -34.44 -0.30 -14.86 15 8 H 0.06 1.74 7.74 -52.49 -0.41 1.34 15 9 C 0.03 0.91 4.56 -27.88 -0.13 0.78 15 10 C 0.10 2.10 2.40 -67.71 -0.16 1.94 15 11 H 0.07 1.63 8.14 -51.93 -0.42 1.21 15 12 N -0.82 -15.30 8.88 -4.67 -0.04 -15.34 15 13 C 0.04 0.78 3.13 -26.16 -0.08 0.69 15 14 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 15 C -0.16 -2.10 6.18 -25.20 -0.16 -2.25 15 16 C -0.15 -1.85 7.15 -24.73 -0.18 -2.02 15 17 C 0.04 0.59 7.72 38.21 0.29 0.88 15 18 O -0.36 -6.95 10.55 -35.23 -0.37 -7.32 15 19 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15 20 H 0.03 0.85 7.62 -51.93 -0.40 0.46 15 21 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 15 22 H 0.32 4.83 7.46 -39.30 -0.29 4.54 15 23 H 0.33 5.95 9.00 -39.29 -0.35 5.60 15 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.08 1.00 6.59 -51.93 -0.34 0.66 15 26 H 0.07 0.70 8.14 -51.92 -0.42 0.28 15 27 H 0.08 0.91 8.14 -51.92 -0.42 0.49 15 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 15 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 LS Contribution 240.88 15.07 3.63 3.63 Total: -1.00 -32.70 240.88 -6.19 -38.89 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.31 Total: 3.50 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -0.81 Total: -13.46 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.69 Total: -43.02 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.37 Total: -7.32 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -32.70 -6.19 -38.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260916832.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.466 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds