Wall clock time and date at job start Mon Mar 30 2020 02:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47000 * 54.99344 * 10 9 7 12 12 N 1.46904 * 109.47145 * 295.00024 * 10 9 7 13 13 C 1.52993 * 109.47360 * 175.00112 * 10 9 7 14 14 H 1.09000 * 109.87256 * 58.99081 * 13 10 9 15 15 C 1.54101 * 109.87944 * 179.97438 * 13 10 9 16 16 C 1.54807 * 104.18403 * 121.45447 * 15 13 10 17 17 C 1.54996 * 102.09738 * 20.87852 * 16 15 13 18 18 O 1.43745 * 109.87650 * 297.83230 * 13 10 9 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 21 21 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 22 22 H 1.00892 * 111.00190 * 176.04744 * 12 10 9 23 23 H 1.00901 * 110.99866 * 300.00464 * 12 10 9 24 24 H 1.08996 * 110.48531 * 240.12481 * 15 13 10 25 25 H 1.08997 * 110.48843 * 2.64153 * 15 13 10 26 26 H 1.09010 * 110.91107 * 139.08219 * 16 15 13 27 27 H 1.09009 * 110.90793 * 262.67726 * 16 15 13 28 28 H 1.08997 * 110.61590 * 81.48043 * 17 16 15 29 29 H 1.09000 * 110.62003 * 204.31633 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9294 -3.5551 0.8412 12 7 3.0084 -3.6539 -1.2558 13 6 1.4845 -4.9835 0.1252 14 1 0.7852 -5.0888 -0.7043 15 6 2.4775 -6.1619 0.1255 16 6 2.2107 -6.8825 1.4693 17 6 0.7820 -6.3951 1.8212 18 8 0.7747 -5.0219 1.3745 19 1 -0.4849 0.8400 0.0004 20 1 0.6248 -2.5571 0.8897 21 1 0.6240 -2.5567 -0.8903 22 1 3.7160 -4.3731 -1.2535 23 1 2.3961 -3.7517 -2.0518 24 1 2.2769 -6.8300 -0.7120 25 1 3.5035 -5.7962 0.0834 26 1 2.2320 -7.9649 1.3414 27 1 2.9270 -6.5679 2.2284 28 1 0.0344 -6.9776 1.2828 29 1 0.6106 -6.4527 2.8961 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260916832.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:44 Heat of formation + Delta-G solvation = -83.280839 kcal Electronic energy + Delta-G solvation = -11593.496698 eV Core-core repulsion = 9514.929020 eV Total energy + Delta-G solvation = -2078.567678 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.55534 -36.78601 -34.53972 -32.91478 -30.19053 -29.57008 -26.05372 -23.63550 -22.29501 -21.31510 -18.44551 -17.46517 -16.88532 -16.80095 -16.44001 -15.76892 -14.60975 -14.48827 -14.27195 -14.03338 -13.13386 -12.88135 -12.74441 -12.62961 -12.29724 -12.23183 -11.99229 -11.59214 -11.23469 -11.07641 -10.71504 -10.50206 -9.37011 -8.10565 -6.17799 1.41395 1.45829 1.53369 2.47323 3.00358 3.21728 3.65675 3.78355 3.94670 4.01715 4.16424 4.37049 4.46706 4.69023 4.79700 4.88693 4.92054 5.05936 5.08336 5.20014 5.51968 5.71912 5.86135 6.06941 6.32600 6.51354 6.84065 6.97090 7.48563 9.01634 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.067663 B = 0.009832 C = 0.009161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.716640 B = 2847.134395 C = 3055.853210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.010 4.010 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.510 4.510 8 H 0.060 0.940 9 C 0.041 3.959 10 C 0.112 3.888 11 H 0.060 0.940 12 N -0.824 5.824 13 C 0.044 3.956 14 H 0.050 0.950 15 C -0.147 4.147 16 C -0.144 4.144 17 C 0.030 3.970 18 O -0.403 6.403 19 H 0.260 0.740 20 H -0.010 1.010 21 H -0.015 1.015 22 H 0.343 0.657 23 H 0.339 0.661 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.263 -14.159 0.500 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.206 4.206 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.548 4.548 8 H 0.078 0.922 9 C 0.003 3.997 10 C 0.000 4.000 11 H 0.078 0.922 12 N -0.356 5.356 13 C -0.016 4.016 14 H 0.068 0.932 15 C -0.185 4.185 16 C -0.181 4.181 17 C -0.046 4.046 18 O -0.322 6.322 19 H 0.068 0.932 20 H 0.008 0.992 21 H 0.003 0.997 22 H 0.157 0.843 23 H 0.152 0.848 24 H 0.111 0.889 25 H 0.102 0.898 26 H 0.126 0.874 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.256 -13.130 0.822 14.167 hybrid contribution -0.454 -0.052 -0.215 0.504 sum 4.803 -13.182 0.607 14.043 Atomic orbital electron populations 1.70123 1.07809 1.27368 1.53094 1.25990 0.95723 1.03303 0.95538 0.85495 0.78141 0.78288 0.79010 1.19281 1.21099 1.19452 1.21523 0.93391 0.91710 1.48182 0.92210 1.18905 0.93475 0.93138 0.94156 1.21366 0.94126 0.92175 0.92339 0.92191 1.58753 1.18180 1.55463 1.03189 1.23782 0.93567 0.97632 0.86612 0.93213 1.23024 0.99830 0.96062 0.99554 1.23099 0.96452 1.01954 0.96639 1.23828 0.97472 0.82197 1.01089 1.88998 1.76692 1.28231 1.38271 0.93180 0.99202 0.99712 0.84263 0.84787 0.88869 0.89784 0.87445 0.90608 0.91524 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.69 13.29 21.45 0.28 -60.41 15 2 C -0.01 -0.59 5.46 84.66 0.46 -0.13 15 3 Si 0.97 47.03 29.54 68.60 2.03 49.06 15 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 15 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 15 6 H -0.27 -12.62 7.11 99.48 0.71 -11.91 15 7 C -0.51 -30.72 8.84 25.60 0.23 -30.50 15 8 H 0.06 3.52 7.74 -2.91 -0.02 3.50 15 9 C 0.04 2.29 4.56 29.85 0.14 2.43 15 10 C 0.11 4.79 2.40 44.91 0.11 4.89 15 11 H 0.06 2.70 8.14 -2.39 -0.02 2.68 15 12 N -0.82 -30.08 8.88 -168.68 -1.50 -31.58 15 13 C 0.04 1.56 3.13 30.96 0.10 1.66 15 14 H 0.05 1.81 8.14 -2.39 -0.02 1.79 15 15 C -0.15 -3.52 6.18 31.58 0.20 -3.33 15 16 C -0.14 -3.01 7.15 31.89 0.23 -2.78 15 17 C 0.03 0.80 7.72 72.67 0.56 1.36 15 18 O -0.40 -15.86 10.55 -148.98 -1.57 -17.43 15 19 H 0.26 15.75 8.31 -92.71 -0.77 14.98 15 20 H -0.01 -0.65 7.62 -2.39 -0.02 -0.67 15 21 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 15 22 H 0.34 9.65 7.46 -89.70 -0.67 8.98 15 23 H 0.34 11.87 9.00 -89.69 -0.81 11.07 15 24 H 0.09 1.78 8.14 -2.39 -0.02 1.77 15 25 H 0.08 1.91 6.59 -2.39 -0.02 1.90 15 26 H 0.11 1.55 8.14 -2.38 -0.02 1.53 15 27 H 0.08 1.60 8.14 -2.38 -0.02 1.58 15 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 15 29 H 0.10 2.31 8.14 -2.39 -0.02 2.29 15 Total: -1.00 -72.28 240.88 0.92 -71.37 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -0.34 Total: 15.39 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 2.01 Total: -26.40 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -1.21 Total: -91.99 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -1.57 Total: -17.43 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -72.28 0.92 -71.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260916832.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.914 kcal (2) G-P(sol) polarization free energy of solvation -72.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds