Wall clock time and date at job start Mon Mar 30 2020 02:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.51926 * 304.99463 * 10 9 7 12 12 C 1.53114 * 109.52194 * 65.12002 * 10 9 7 13 13 C 1.53046 * 109.27481 * 177.49489 * 12 10 9 14 14 N 1.46850 * 109.57729 * 300.92147 * 13 12 10 15 15 C 1.46846 * 111.19808 * 61.70738 * 14 13 12 16 16 C 1.53036 * 109.52067 * 298.25779 * 15 14 13 17 17 H 1.08997 * 109.50577 * 299.23639 * 16 15 14 18 18 O 1.42903 * 109.50391 * 179.11937 * 16 15 14 19 19 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 21 21 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 22 22 H 1.08992 * 109.50873 * 297.49999 * 12 10 9 23 23 H 1.09004 * 109.50141 * 57.62544 * 12 10 9 24 24 H 1.08995 * 109.46671 * 180.86851 * 13 12 10 25 25 H 1.09001 * 109.40129 * 60.92899 * 13 12 10 26 26 H 1.00900 * 110.99771 * 297.61202 * 14 13 12 27 27 H 1.09001 * 109.46313 * 178.24777 * 15 14 13 28 28 H 1.08997 * 109.45544 * 58.26701 * 15 14 13 29 29 H 0.96704 * 114.00145 * 60.19760 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9299 -3.5560 -0.8411 12 6 3.0394 -3.6564 1.3097 13 6 3.9876 -4.8575 1.3307 14 7 3.2120 -6.0988 1.2115 15 6 2.4794 -6.1471 -0.0602 16 6 1.4850 -4.9854 -0.1220 17 1 0.7720 -5.0727 0.6978 18 8 0.7868 -5.0208 -1.3683 19 1 -0.4850 -0.8401 -0.0004 20 1 0.6242 -2.5567 0.8904 21 1 0.6248 -2.5571 -0.8896 22 1 3.6166 -2.7346 1.3814 23 1 2.3515 -3.7223 2.1527 24 1 4.5434 -4.8652 2.2683 25 1 4.6846 -4.7832 0.4960 26 1 2.5853 -6.2102 1.9943 27 1 1.9397 -7.0913 -0.1328 28 1 3.1837 -6.0667 -0.8882 29 1 0.2821 -5.8328 -1.5135 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260927357.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:58 Heat of formation + Delta-G solvation = -100.957808 kcal Electronic energy + Delta-G solvation = -11754.230980 eV Core-core repulsion = 9674.896771 eV Total energy + Delta-G solvation = -2079.334209 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.41666 -36.84959 -35.95274 -33.36539 -30.76470 -28.53869 -25.58427 -23.68540 -22.98796 -21.21747 -18.92408 -18.27742 -17.01600 -16.19858 -15.70926 -15.64811 -15.33669 -14.50135 -14.36077 -13.83038 -13.35982 -13.01952 -13.00599 -12.73523 -12.36915 -11.99676 -11.76207 -11.68651 -11.49785 -11.19969 -10.65020 -10.55569 -9.32793 -8.71200 -6.40555 1.48958 1.58366 1.77363 2.54730 3.13772 3.13865 3.46795 3.77882 3.92277 3.97238 4.24595 4.29481 4.38957 4.52782 4.79475 4.87798 4.94106 5.00393 5.13179 5.24595 5.33886 5.53217 5.89590 5.98564 6.15675 6.39336 6.54634 6.89976 7.41972 8.68872 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.055055 B = 0.011348 C = 0.009916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.459205 B = 2466.773279 C = 2823.104537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.044 4.044 3 Si 1.119 2.881 4 H -0.283 1.283 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.609 4.609 8 H 0.052 0.948 9 C 0.024 3.976 10 C -0.067 4.067 11 H 0.045 0.955 12 C -0.132 4.132 13 C 0.061 3.939 14 N -0.673 5.673 15 C 0.040 3.960 16 C 0.077 3.923 17 H 0.045 0.955 18 O -0.583 6.583 19 H 0.251 0.749 20 H -0.020 1.020 21 H -0.020 1.020 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.348 0.652 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 -11.396 2.507 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.241 4.241 3 Si 0.939 3.061 4 H -0.209 1.209 5 H -0.196 1.196 6 H -0.189 1.189 7 C -0.647 4.647 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.086 4.086 11 H 0.064 0.936 12 C -0.171 4.171 13 C -0.068 4.068 14 N -0.303 5.303 15 C -0.090 4.090 16 C 0.016 3.984 17 H 0.063 0.937 18 O -0.389 6.389 19 H 0.061 0.939 20 H -0.002 1.002 21 H -0.001 1.001 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.116 0.884 25 H 0.088 0.912 26 H 0.166 0.834 27 H 0.120 0.880 28 H 0.090 0.910 29 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 6.739 -9.576 2.200 11.914 hybrid contribution -1.349 -1.301 0.039 1.874 sum 5.390 -10.876 2.239 12.343 Atomic orbital electron populations 1.70916 1.08077 1.29562 1.49198 1.27529 0.96613 1.07087 0.92840 0.82934 0.74124 0.70909 0.78123 1.20881 1.19550 1.18938 1.22456 0.94564 0.93198 1.54496 0.92931 1.19064 0.94545 0.94468 0.93196 1.21027 0.96571 0.93188 0.97820 0.93609 1.22150 0.98703 1.00590 0.95646 1.22091 0.95339 0.86041 1.03356 1.60778 1.29445 1.35689 1.04417 1.22701 0.95671 0.97310 0.93360 1.22724 0.93471 0.96546 0.85647 0.93721 1.86612 1.68091 1.45463 1.38769 0.93938 1.00213 1.00145 0.91968 0.92919 0.88411 0.91168 0.83399 0.87960 0.91029 0.76106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.12 13.65 21.45 0.29 -60.83 15 2 C -0.04 -2.67 5.46 84.65 0.46 -2.21 15 3 Si 1.12 51.81 29.90 68.60 2.05 53.86 15 4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 15 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 6 H -0.26 -11.16 7.11 99.48 0.71 -10.46 15 7 C -0.61 -36.22 8.44 25.60 0.22 -36.00 15 8 H 0.05 3.01 7.07 -2.91 -0.02 2.99 15 9 C 0.02 1.35 3.70 29.85 0.11 1.46 15 10 C -0.07 -2.91 1.93 -10.71 -0.02 -2.93 15 11 H 0.05 2.12 8.14 -2.39 -0.02 2.10 15 12 C -0.13 -4.80 5.14 30.65 0.16 -4.65 15 13 C 0.06 1.68 6.55 86.33 0.57 2.24 15 14 N -0.67 -16.60 6.87 -513.99 -3.53 -20.13 15 15 C 0.04 1.03 6.18 86.33 0.53 1.57 15 16 C 0.08 2.63 3.03 30.65 0.09 2.72 15 17 H 0.04 1.53 8.14 -2.39 -0.02 1.51 15 18 O -0.58 -20.86 12.68 -148.98 -1.89 -22.75 15 19 H 0.25 16.75 7.22 -92.71 -0.67 16.08 15 20 H -0.02 -1.20 8.01 -2.39 -0.02 -1.22 15 21 H -0.02 -1.23 7.49 -2.39 -0.02 -1.25 15 22 H 0.06 2.50 7.04 -2.39 -0.02 2.48 15 23 H 0.05 1.92 8.14 -2.38 -0.02 1.90 15 24 H 0.10 2.22 8.14 -2.39 -0.02 2.20 15 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 26 H 0.35 7.62 8.86 -89.69 -0.79 6.83 15 27 H 0.10 2.02 8.14 -2.39 -0.02 2.01 15 28 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 29 H 0.39 9.08 9.08 -74.05 -0.67 8.40 15 Total: -1.00 -72.32 236.61 -1.18 -73.51 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -0.23 Total: 14.14 kcal Atomic # 6 Polarization: -39.91 SS G_CDS: 2.12 Total: -37.79 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -3.24 Total: -80.96 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -1.89 Total: -22.75 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.05 Total: 53.86 kcal Total: -72.32 -1.18 -73.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260927357.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.452 kcal (2) G-P(sol) polarization free energy of solvation -72.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds