Wall clock time and date at job start Mon Mar 30 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99705 * 2 1 4 4 H 1.48497 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46996 * 299.99682 * 3 2 1 6 6 H 1.48501 * 109.47183 * 59.99522 * 3 2 1 7 7 C 1.37871 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00075 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46957 * 59.99502 * 9 7 2 11 11 N 1.46900 * 109.46883 * 299.99619 * 9 7 2 12 12 C 1.53002 * 109.47099 * 179.97438 * 9 7 2 13 13 H 1.09003 * 109.48081 * 299.97309 * 12 9 7 14 14 C 1.53280 * 109.45473 * 179.97438 * 12 9 7 15 15 C 1.53179 * 109.06328 * 182.44699 * 14 12 9 16 16 C 1.53177 * 109.10692 * 56.94222 * 15 14 12 17 17 C 1.53091 * 109.16264 * 302.97408 * 16 15 14 18 18 O 1.42901 * 109.47996 * 59.99917 * 12 9 7 19 19 H 0.96995 * 120.00406 * 0.02562 * 1 2 3 20 20 H 1.00901 * 111.00123 * 176.04484 * 11 9 7 21 21 H 1.00903 * 110.99784 * 299.99937 * 11 9 7 22 22 H 1.09006 * 109.64318 * 62.53179 * 14 12 9 23 23 H 1.09002 * 109.50809 * 302.28496 * 14 12 9 24 24 H 1.09002 * 109.54484 * 297.03018 * 15 14 12 25 25 H 1.08999 * 109.54222 * 176.85184 * 15 14 12 26 26 H 1.09004 * 109.52253 * 62.88396 * 16 15 14 27 27 H 1.08999 * 109.52129 * 183.00522 * 16 15 14 28 28 H 1.09000 * 109.47857 * 177.59315 * 17 16 15 29 29 H 1.09000 * 109.48011 * 297.61575 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.6248 -2.5571 -0.8897 11 7 0.4063 -2.5767 1.1997 12 6 2.2455 -3.6620 0.0005 13 1 2.8720 -3.6046 -0.8897 14 6 1.4789 -4.9893 0.0012 15 6 2.4812 -6.1460 0.0630 16 6 3.3611 -5.9810 1.3059 17 6 4.0537 -4.6167 1.2538 18 8 3.0672 -3.5864 1.1672 19 1 -0.4850 0.8400 -0.0004 20 1 -0.1577 -3.4134 1.1912 21 1 0.9641 -2.5251 2.0390 22 1 0.8852 -5.0700 -0.9095 23 1 0.8219 -5.0297 0.8700 24 1 3.1059 -6.1353 -0.8302 25 1 1.9430 -7.0921 0.1202 26 1 2.7422 -6.0415 2.2011 27 1 4.1118 -6.7710 1.3281 28 1 4.6479 -4.4761 2.1567 29 1 4.7038 -4.5722 0.3801 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260928578.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:10 Heat of formation + Delta-G solvation = -58.264764 kcal Electronic energy + Delta-G solvation = -11910.956123 eV Core-core repulsion = 9833.473223 eV Total energy + Delta-G solvation = -2077.482899 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.83545 -34.33748 -33.09582 -31.56488 -29.26446 -26.23106 -24.41464 -23.05213 -20.48999 -19.33711 -16.27968 -15.51216 -15.33517 -14.42951 -14.21535 -14.13586 -13.68001 -13.05034 -12.46548 -12.13757 -11.92718 -11.15879 -10.92114 -10.85941 -10.69112 -10.51434 -10.38510 -9.93360 -9.45560 -9.01204 -8.59436 -8.28887 -6.81508 -5.73635 -3.84954 3.41371 3.49228 3.53752 4.54417 4.59852 5.09980 5.15780 5.22525 5.50486 5.53947 5.67975 5.82648 5.95622 6.06705 6.19799 6.24184 6.26890 6.37891 6.48876 6.81207 6.85147 7.44235 8.05372 8.12668 8.35106 8.83325 9.22846 9.34197 9.81842 11.31641 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.064188 B = 0.011994 C = 0.010844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.117006 B = 2333.908445 C = 2581.374288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.079 3.921 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.233 3.767 10 H 0.046 0.954 11 N -0.809 5.809 12 C 0.060 3.940 13 H 0.043 0.957 14 C -0.154 4.154 15 C -0.120 4.120 16 C -0.154 4.154 17 C 0.057 3.943 18 O -0.358 6.358 19 H 0.252 0.748 20 H 0.291 0.709 21 H 0.324 0.676 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.869 -10.168 0.854 11.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.126 4.126 3 Si 0.710 3.290 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.560 4.560 8 H 0.073 0.927 9 C 0.123 3.877 10 H 0.063 0.937 11 N -0.336 5.336 12 C 0.000 4.000 13 H 0.061 0.939 14 C -0.192 4.192 15 C -0.158 4.158 16 C -0.191 4.191 17 C -0.021 4.021 18 O -0.277 6.277 19 H 0.062 0.938 20 H 0.102 0.898 21 H 0.136 0.864 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.328 -9.220 0.719 10.211 hybrid contribution 1.104 -0.302 0.027 1.145 sum 5.432 -9.522 0.747 10.988 Atomic orbital electron populations 1.70118 1.05636 1.25239 1.47953 1.24957 0.94595 0.98501 0.94595 0.86732 0.80308 0.84673 0.77292 1.19993 1.21337 1.21197 1.20927 0.92401 0.89962 1.52722 0.92717 1.19110 0.87601 0.90127 0.90858 0.93652 1.59116 1.28336 1.41255 1.04896 1.23411 0.93337 0.96209 0.87044 0.93856 1.22313 0.98559 0.95999 1.02286 1.21576 0.97970 0.98508 0.97729 1.22174 0.99626 0.98389 0.98942 1.22451 0.91295 0.87509 1.00839 1.88068 1.47142 1.48357 1.44107 0.93781 0.89775 0.86386 0.91493 0.91553 0.92395 0.92459 0.91523 0.91948 0.89971 0.94218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.70 12.77 55.43 0.71 -25.00 15 2 C 0.08 2.28 5.39 -17.82 -0.10 2.19 15 3 Si 0.88 22.11 29.54 -169.99 -5.02 17.09 15 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 7 C -0.52 -14.88 8.39 -34.44 -0.29 -15.17 15 8 H 0.05 1.59 7.70 -52.49 -0.40 1.18 15 9 C 0.23 5.92 2.55 -68.86 -0.18 5.74 15 10 H 0.05 1.25 8.14 -51.93 -0.42 0.82 15 11 N -0.81 -19.87 8.42 -5.65 -0.05 -19.92 15 12 C 0.06 1.26 2.41 -26.59 -0.06 1.20 15 13 H 0.04 0.93 8.14 -51.93 -0.42 0.51 15 14 C -0.15 -2.64 5.16 -26.49 -0.14 -2.77 15 15 C -0.12 -1.71 6.02 -26.55 -0.16 -1.87 15 16 C -0.15 -2.12 6.14 -26.59 -0.16 -2.28 15 17 C 0.06 0.92 6.84 37.20 0.25 1.17 15 18 O -0.36 -7.54 9.41 -35.23 -0.33 -7.87 15 19 H 0.25 7.26 8.31 -40.82 -0.34 6.92 15 20 H 0.29 6.33 7.34 -39.29 -0.29 6.04 15 21 H 0.32 7.99 8.44 -39.29 -0.33 7.66 15 22 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 23 H 0.07 1.15 6.65 -51.93 -0.35 0.80 15 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 15 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 LS Contribution 236.08 15.07 3.56 3.56 Total: -1.00 -30.51 236.08 -6.27 -36.79 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.31 Total: 7.16 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -0.83 Total: -11.80 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.66 Total: -44.92 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.33 Total: -7.87 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.51 -6.27 -36.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928578.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.476 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds