Wall clock time and date at job start Mon Mar 30 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99705 * 2 1 4 4 H 1.48497 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46996 * 299.99682 * 3 2 1 6 6 H 1.48501 * 109.47183 * 59.99522 * 3 2 1 7 7 C 1.37871 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00075 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46957 * 59.99502 * 9 7 2 11 11 N 1.46900 * 109.46883 * 299.99619 * 9 7 2 12 12 C 1.53002 * 109.47099 * 179.97438 * 9 7 2 13 13 H 1.09003 * 109.48081 * 299.97309 * 12 9 7 14 14 C 1.53280 * 109.45473 * 179.97438 * 12 9 7 15 15 C 1.53179 * 109.06328 * 182.44699 * 14 12 9 16 16 C 1.53177 * 109.10692 * 56.94222 * 15 14 12 17 17 C 1.53091 * 109.16264 * 302.97408 * 16 15 14 18 18 O 1.42901 * 109.47996 * 59.99917 * 12 9 7 19 19 H 0.96995 * 120.00406 * 0.02562 * 1 2 3 20 20 H 1.00901 * 111.00123 * 176.04484 * 11 9 7 21 21 H 1.00903 * 110.99784 * 299.99937 * 11 9 7 22 22 H 1.09006 * 109.64318 * 62.53179 * 14 12 9 23 23 H 1.09002 * 109.50809 * 302.28496 * 14 12 9 24 24 H 1.09002 * 109.54484 * 297.03018 * 15 14 12 25 25 H 1.08999 * 109.54222 * 176.85184 * 15 14 12 26 26 H 1.09004 * 109.52253 * 62.88396 * 16 15 14 27 27 H 1.08999 * 109.52129 * 183.00522 * 16 15 14 28 28 H 1.09000 * 109.47857 * 177.59315 * 17 16 15 29 29 H 1.09000 * 109.48011 * 297.61575 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.6248 -2.5571 -0.8897 11 7 0.4063 -2.5767 1.1997 12 6 2.2455 -3.6620 0.0005 13 1 2.8720 -3.6046 -0.8897 14 6 1.4789 -4.9893 0.0012 15 6 2.4812 -6.1460 0.0630 16 6 3.3611 -5.9810 1.3059 17 6 4.0537 -4.6167 1.2538 18 8 3.0672 -3.5864 1.1672 19 1 -0.4850 0.8400 -0.0004 20 1 -0.1577 -3.4134 1.1912 21 1 0.9641 -2.5251 2.0390 22 1 0.8852 -5.0700 -0.9095 23 1 0.8219 -5.0297 0.8700 24 1 3.1059 -6.1353 -0.8302 25 1 1.9430 -7.0921 0.1202 26 1 2.7422 -6.0415 2.2011 27 1 4.1118 -6.7710 1.3281 28 1 4.6479 -4.4761 2.1567 29 1 4.7038 -4.5722 0.3801 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260928578.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:10 Heat of formation + Delta-G solvation = -80.372401 kcal Electronic energy + Delta-G solvation = -11911.914782 eV Core-core repulsion = 9833.473223 eV Total energy + Delta-G solvation = -2078.441559 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.31803 -36.22013 -34.43851 -33.61491 -30.83034 -28.26112 -25.98702 -24.55421 -22.11694 -20.83397 -18.39987 -17.01472 -16.96868 -16.30086 -15.93610 -15.43381 -15.34182 -14.52511 -14.26684 -13.69340 -13.43689 -13.14461 -12.74088 -12.53574 -12.16353 -12.06468 -11.93941 -11.47018 -11.19719 -10.98599 -10.51101 -10.13950 -8.74271 -7.93488 -6.12052 1.42071 1.44156 1.55278 2.49770 3.06524 3.33991 3.93517 3.96604 4.01629 4.16697 4.35524 4.50097 4.58486 4.69886 4.86060 4.90023 4.99039 5.09117 5.13990 5.24707 5.38076 5.48156 5.81808 6.23732 6.59250 6.73455 7.18067 7.38962 7.58562 9.10590 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.064188 B = 0.011994 C = 0.010844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.117006 B = 2333.908445 C = 2581.374288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.029 3.971 3 Si 0.947 3.053 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.043 0.957 9 C 0.230 3.770 10 H 0.017 0.983 11 N -0.818 5.818 12 C 0.070 3.930 13 H 0.031 0.969 14 C -0.148 4.148 15 C -0.117 4.117 16 C -0.147 4.147 17 C 0.046 3.954 18 O -0.389 6.389 19 H 0.253 0.747 20 H 0.308 0.692 21 H 0.323 0.677 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.802 -11.259 1.187 12.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.174 4.174 3 Si 0.773 3.227 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.575 4.575 8 H 0.061 0.939 9 C 0.120 3.880 10 H 0.034 0.966 11 N -0.345 5.345 12 C 0.010 3.990 13 H 0.049 0.951 14 C -0.185 4.185 15 C -0.154 4.154 16 C -0.184 4.184 17 C -0.031 4.031 18 O -0.308 6.308 19 H 0.062 0.938 20 H 0.120 0.880 21 H 0.135 0.865 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.272 -10.327 1.048 11.643 hybrid contribution 0.846 0.005 -0.068 0.849 sum 6.118 -10.323 0.980 12.040 Atomic orbital electron populations 1.70236 1.06960 1.26051 1.49002 1.25692 0.95458 1.01839 0.94362 0.85706 0.78983 0.80519 0.77446 1.19729 1.20497 1.20923 1.21225 0.92079 0.91807 1.52434 0.93907 1.18889 0.88186 0.91004 0.89937 0.96554 1.58932 1.28583 1.42585 1.04431 1.22989 0.92684 0.96485 0.86858 0.95054 1.22215 0.98915 0.95142 1.02275 1.21582 0.97489 0.98032 0.98296 1.22132 1.00107 0.97608 0.98565 1.22761 0.90667 0.87798 1.01831 1.87990 1.48296 1.50873 1.43679 0.93777 0.88009 0.86541 0.91309 0.91776 0.91835 0.89889 0.91642 0.88732 0.88342 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.95 12.77 21.45 0.27 -53.68 15 2 C 0.03 1.68 5.39 84.65 0.46 2.14 15 3 Si 0.95 45.83 29.54 68.60 2.03 47.86 15 4 H -0.27 -12.94 7.11 99.48 0.71 -12.23 15 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 15 6 H -0.28 -13.51 7.11 99.48 0.71 -12.81 15 7 C -0.54 -31.14 8.39 25.60 0.21 -30.93 15 8 H 0.04 2.52 7.70 -2.91 -0.02 2.50 15 9 C 0.23 11.89 2.55 44.17 0.11 12.01 15 10 H 0.02 0.94 8.14 -2.38 -0.02 0.92 15 11 N -0.82 -40.52 8.42 -171.79 -1.45 -41.97 15 12 C 0.07 2.94 2.41 30.69 0.07 3.01 15 13 H 0.03 1.36 8.14 -2.39 -0.02 1.34 15 14 C -0.15 -4.87 5.16 30.75 0.16 -4.71 15 15 C -0.12 -2.96 6.02 30.71 0.18 -2.77 15 16 C -0.15 -3.55 6.14 30.68 0.19 -3.36 15 17 C 0.05 1.39 6.84 72.01 0.49 1.89 15 18 O -0.39 -16.15 9.41 -148.98 -1.40 -17.55 15 19 H 0.25 14.68 8.31 -92.71 -0.77 13.91 15 20 H 0.31 13.37 7.34 -89.69 -0.66 12.72 15 21 H 0.32 16.03 8.44 -89.69 -0.76 15.27 15 22 H 0.07 2.21 8.14 -2.38 -0.02 2.19 15 23 H 0.06 2.13 6.65 -2.39 -0.02 2.11 15 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 15 25 H 0.08 1.73 8.14 -2.39 -0.02 1.71 15 26 H 0.06 1.62 8.14 -2.38 -0.02 1.61 15 27 H 0.09 1.73 8.14 -2.39 -0.02 1.71 15 28 H 0.10 2.61 8.14 -2.39 -0.02 2.60 15 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 15 Total: -1.00 -65.14 236.08 1.06 -64.09 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.28 Total: 23.98 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 1.88 Total: -22.73 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -1.17 Total: -95.65 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -1.40 Total: -17.55 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -65.14 1.06 -64.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928578.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.285 kcal (2) G-P(sol) polarization free energy of solvation -65.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds