Wall clock time and date at job start Mon Mar 30 2020 02:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00329 * 2 1 4 4 H 1.48500 * 109.46911 * 95.25894 * 3 2 1 5 5 H 1.48493 * 109.47295 * 215.26281 * 3 2 1 6 6 H 1.48505 * 109.46923 * 335.26349 * 3 2 1 7 7 C 1.37876 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00219 * 6.85874 * 7 2 1 9 9 C 1.50704 * 120.00088 * 186.86491 * 7 2 1 10 10 H 1.09000 * 109.46624 * 358.13194 * 9 7 2 11 11 C 1.53002 * 109.46965 * 238.13566 * 9 7 2 12 12 N 1.46895 * 109.47368 * 65.47653 * 11 9 7 13 13 C 1.52991 * 109.47192 * 118.13344 * 9 7 2 14 14 H 1.09009 * 110.27497 * 180.63509 * 13 9 7 15 15 C 1.54946 * 110.30998 * 302.83287 * 13 9 7 16 16 C 1.55307 * 100.94289 * 155.36280 * 15 13 9 17 17 C 1.54385 * 102.25164 * 325.86625 * 16 15 13 18 18 O 1.43234 * 107.58875 * 21.35881 * 17 16 15 19 19 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47268 * 185.48188 * 11 9 7 21 21 H 1.09005 * 109.46974 * 305.47963 * 11 9 7 22 22 H 1.00904 * 110.99815 * 63.85829 * 12 11 9 23 23 H 1.00900 * 111.00254 * 187.80872 * 12 11 9 24 24 H 1.09001 * 111.12523 * 273.27936 * 15 13 9 25 25 H 1.08994 * 111.12683 * 37.44315 * 15 13 9 26 26 H 1.09000 * 110.84907 * 207.67564 * 16 15 13 27 27 H 1.09005 * 111.02645 * 84.13233 * 16 15 13 28 28 H 1.08999 * 109.82799 * 261.84336 * 17 16 15 29 29 H 1.09000 * 109.90436 * 140.91076 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6079 1.9821 1.3942 5 1 3.4867 1.4747 -0.8083 6 1 1.3955 2.6822 -0.5859 7 6 2.0045 -1.1941 -0.0005 8 1 1.4703 -2.1260 -0.1127 9 6 3.5034 -1.1989 0.1555 10 1 3.8650 -0.1727 0.2217 11 6 4.1398 -1.8869 -1.0539 12 7 3.8872 -1.0883 -2.2607 13 6 3.8811 -1.9560 1.4301 14 1 4.9632 -1.9578 1.5618 15 6 3.1885 -1.3172 2.6602 16 6 3.1518 -2.5237 3.6374 17 6 2.9513 -3.7165 2.6779 18 8 3.3832 -3.3023 1.3765 19 1 -0.4850 0.8401 0.0004 20 1 5.2145 -1.9775 -0.8966 21 1 3.7058 -2.8791 -1.1775 22 1 4.3334 -0.1856 -2.1969 23 1 4.1850 -1.5811 -3.0893 24 1 3.7850 -0.5005 3.0668 25 1 2.1816 -0.9807 2.4135 26 1 2.3138 -2.4373 4.3292 27 1 4.0926 -2.6163 4.1801 28 1 1.8975 -3.9932 2.6472 29 1 3.5470 -4.5659 3.0122 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260963000.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:48 Heat of formation + Delta-G solvation = -51.892111 kcal Electronic energy + Delta-G solvation = -12029.901309 eV Core-core repulsion = 9952.694748 eV Total energy + Delta-G solvation = -2077.206561 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.68116 -34.87400 -32.13524 -31.25313 -30.19266 -26.44437 -24.15524 -21.79308 -20.66405 -19.03363 -17.19094 -15.62502 -15.33511 -14.69936 -14.25034 -13.42346 -13.29218 -12.91251 -12.67566 -12.26111 -12.01896 -11.06491 -10.99083 -10.80208 -10.67344 -10.27364 -9.76275 -9.69539 -9.59175 -8.96418 -8.49687 -8.33907 -7.63169 -5.87322 -3.79391 3.36158 3.45775 3.46826 4.57652 4.67453 5.21537 5.39680 5.47176 5.53060 5.71684 5.96711 5.99207 6.16446 6.25791 6.33556 6.42302 6.48110 6.53596 6.84656 6.96660 7.21680 7.23623 7.85006 7.98449 8.15634 8.31241 8.76416 9.23569 9.77274 11.27072 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.035025 B = 0.018782 C = 0.015133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.243052 B = 1490.458152 C = 1849.822680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.285 1.285 5 H -0.267 1.267 6 H -0.295 1.295 7 C -0.459 4.459 8 H 0.074 0.926 9 C 0.010 3.990 10 H 0.042 0.958 11 C 0.081 3.919 12 N -0.831 5.831 13 C 0.093 3.907 14 H 0.037 0.963 15 C -0.147 4.147 16 C -0.155 4.155 17 C 0.057 3.943 18 O -0.368 6.368 19 H 0.259 0.741 20 H -0.010 1.010 21 H 0.067 0.933 22 H 0.326 0.674 23 H 0.322 0.678 24 H 0.061 0.939 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.444 -2.245 4.075 9.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.129 4.129 3 Si 0.705 3.295 4 H -0.211 1.211 5 H -0.193 1.193 6 H -0.221 1.221 7 C -0.497 4.497 8 H 0.092 0.908 9 C -0.010 4.010 10 H 0.060 0.940 11 C -0.049 4.049 12 N -0.358 5.358 13 C 0.035 3.965 14 H 0.055 0.945 15 C -0.184 4.184 16 C -0.193 4.193 17 C -0.020 4.020 18 O -0.287 6.287 19 H 0.069 0.931 20 H 0.008 0.992 21 H 0.086 0.914 22 H 0.138 0.862 23 H 0.133 0.867 24 H 0.079 0.921 25 H 0.124 0.876 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.492 -2.308 4.097 8.846 hybrid contribution 1.476 1.066 0.119 1.825 sum 8.969 -1.242 4.216 9.988 Atomic orbital electron populations 1.69908 1.06183 1.26302 1.52435 1.25000 0.94520 0.98274 0.95102 0.86932 0.80282 0.84504 0.77794 1.21133 1.19255 1.22139 1.20591 0.88091 0.94351 1.46651 0.90769 1.19441 0.98643 0.93874 0.89025 0.94042 1.21822 0.93783 0.97763 0.91558 1.58487 1.67301 1.06191 1.03864 1.23169 0.93899 0.81956 0.97520 0.94538 1.23322 1.04438 0.96475 0.94197 1.23066 1.01336 0.96322 0.98552 1.22915 0.99233 0.95849 0.84031 1.88381 1.82633 1.29957 1.27735 0.93143 0.99240 0.91419 0.86199 0.86693 0.92061 0.87590 0.90943 0.92005 0.91986 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.05 13.96 55.43 0.77 -27.28 15 2 C 0.07 2.02 5.23 -17.82 -0.09 1.93 15 3 Si 0.88 21.79 26.99 -169.99 -4.59 17.21 15 4 H -0.28 -6.89 7.11 56.52 0.40 -6.48 15 5 H -0.27 -6.28 6.46 56.52 0.36 -5.91 15 6 H -0.29 -7.48 7.11 56.52 0.40 -7.08 15 7 C -0.46 -12.78 6.83 -34.44 -0.24 -13.01 15 8 H 0.07 2.35 8.06 -52.48 -0.42 1.93 15 9 C 0.01 0.22 1.93 -91.77 -0.18 0.05 15 10 H 0.04 0.98 4.73 -51.93 -0.25 0.73 15 11 C 0.08 1.75 5.95 -3.83 -0.02 1.72 15 12 N -0.83 -16.93 9.31 -10.37 -0.10 -17.03 15 13 C 0.09 1.96 3.19 -25.71 -0.08 1.88 15 14 H 0.04 0.71 8.14 -51.92 -0.42 0.28 15 15 C -0.15 -2.92 6.45 -24.48 -0.16 -3.08 15 16 C -0.16 -2.55 7.02 -24.78 -0.17 -2.73 15 17 C 0.06 1.02 7.79 37.88 0.30 1.31 15 18 O -0.37 -8.01 10.20 -35.23 -0.36 -8.37 15 19 H 0.26 7.59 8.31 -40.82 -0.34 7.25 15 20 H -0.01 -0.20 8.14 -51.93 -0.42 -0.62 15 21 H 0.07 1.54 7.92 -51.93 -0.41 1.13 15 22 H 0.33 6.31 8.78 -39.29 -0.35 5.97 15 23 H 0.32 5.49 9.08 -39.29 -0.36 5.14 15 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 25 H 0.11 2.48 6.59 -51.93 -0.34 2.14 15 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 LS Contribution 235.97 15.07 3.56 3.56 Total: -1.00 -30.91 235.97 -5.61 -36.53 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -4.25 Total: 7.31 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -0.65 Total: -11.93 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.68 Total: -44.31 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.36 Total: -8.37 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.59 Total: 17.21 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.91 -5.61 -36.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963000.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.364 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds