Wall clock time and date at job start Mon Mar 30 2020 01:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.51016 * 2 1 4 4 C 1.54092 * 110.69101 * 122.83431 * 2 1 3 5 5 O 1.45701 * 104.00670 * 118.63204 * 4 2 1 6 6 C 1.33765 * 109.47862 * 359.75375 * 5 4 2 7 7 O 1.21518 * 123.07248 * 180.23841 * 6 5 4 8 8 N 1.34002 * 113.85963 * 0.43946 * 6 5 4 9 9 C 1.46493 * 125.56403 * 179.83380 * 8 6 5 10 10 C 1.50706 * 109.47128 * 269.68755 * 9 8 6 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 H 1.08998 * 109.47352 * 182.73774 * 1 2 3 19 19 H 1.09003 * 109.47454 * 302.73999 * 1 2 3 20 20 H 1.09001 * 109.47557 * 62.73380 * 1 2 3 21 21 H 1.08998 * 110.52287 * 237.26075 * 4 2 1 22 22 H 1.08999 * 110.51924 * 0.02562 * 4 2 1 23 23 H 1.09001 * 109.47786 * 149.69028 * 9 8 6 24 24 H 1.09006 * 109.47401 * 29.68613 * 9 8 6 25 25 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9118 1.0209 0.0000 4 6 2.0744 -0.7816 1.2112 5 8 2.8327 -1.8733 0.6145 6 6 2.7649 -1.7870 -0.7186 7 8 3.3082 -2.5792 -1.4629 8 7 2.0466 -0.7448 -1.1585 9 6 1.8093 -0.4061 -2.5638 10 6 2.8943 0.5214 -3.0472 11 1 3.6817 0.8282 -2.3746 12 6 2.8818 0.9783 -4.3480 13 7 1.9227 0.6052 -5.1668 14 14 4.2263 2.1285 -4.9468 15 1 3.9865 2.4709 -6.3718 16 1 4.2163 3.3691 -4.1307 17 1 5.5455 1.4594 -4.8143 18 1 -0.3634 -1.0265 0.0491 19 1 -0.3634 0.5558 0.8644 20 1 -0.3634 0.4708 -0.9135 21 1 2.7259 -0.1482 1.8133 22 1 1.2544 -1.1714 1.8144 23 1 0.8413 0.0856 -2.6607 24 1 1.8159 -1.3165 -3.1632 25 1 1.2243 0.0082 -4.8557 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049357.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:54 Heat of formation + Delta-G solvation = -103.916170 kcal Electronic energy + Delta-G solvation = -11540.886532 eV Core-core repulsion = 9325.590945 eV Total energy + Delta-G solvation = -2215.295588 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.55295 -38.32135 -37.16895 -35.11402 -32.46239 -29.08348 -27.71743 -25.46562 -23.09030 -22.10620 -19.27419 -18.48756 -17.68432 -17.51745 -16.22441 -15.68716 -15.47502 -15.23620 -14.59338 -14.21796 -13.73990 -13.57084 -13.26644 -12.81789 -12.53163 -12.27116 -11.94893 -11.74164 -11.63301 -11.27979 -10.65840 -9.75658 -8.76034 -6.52595 1.49560 1.56230 1.59113 1.69708 1.79439 2.50889 2.66688 3.04560 3.29261 3.79871 3.84937 4.26676 4.44811 4.52629 4.65947 4.78636 4.87079 5.08196 5.22005 5.43343 5.70844 6.05695 6.38399 6.48406 7.00649 7.27005 8.60525 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.050509 B = 0.012553 C = 0.011756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.228163 B = 2230.018520 C = 2381.106692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 H 0.104 0.896 4 C 0.046 3.954 5 O -0.347 6.347 6 C 0.630 3.370 7 O -0.589 6.589 8 N -0.608 5.608 9 C 0.275 3.725 10 C -0.630 4.630 11 H 0.047 0.953 12 C -0.025 4.025 13 N -0.926 5.926 14 Si 1.119 2.881 15 H -0.277 1.277 16 H -0.260 1.260 17 H -0.281 1.281 18 H 0.059 0.941 19 H 0.115 0.885 20 H 0.049 0.951 21 H 0.135 0.865 22 H 0.142 0.858 23 H 0.039 0.961 24 H -0.003 1.003 25 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.525 3.407 13.316 14.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 H 0.121 0.879 4 C -0.028 4.028 5 O -0.257 6.257 6 C 0.384 3.616 7 O -0.479 6.479 8 N -0.353 5.353 9 C 0.156 3.844 10 C -0.668 4.668 11 H 0.065 0.935 12 C -0.225 4.225 13 N -0.562 5.562 14 Si 0.940 3.060 15 H -0.202 1.202 16 H -0.184 1.184 17 H -0.207 1.207 18 H 0.078 0.922 19 H 0.134 0.866 20 H 0.069 0.931 21 H 0.153 0.847 22 H 0.159 0.841 23 H 0.057 0.943 24 H 0.015 0.985 25 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.646 3.701 11.779 12.627 hybrid contribution -0.623 -1.116 0.936 1.585 sum -3.269 2.585 12.715 13.381 Atomic orbital electron populations 1.22095 0.91338 1.03123 1.04167 1.22735 0.97742 0.98000 0.83890 0.87858 1.24884 0.97460 0.85938 0.94489 1.87150 1.69730 1.51202 1.17642 1.18666 0.79142 0.82051 0.81780 1.90924 1.53030 1.47723 1.56267 1.48368 1.51548 1.26822 1.08591 1.18800 0.96756 0.94310 0.74566 1.22568 1.12375 1.31803 1.00065 0.93512 1.27368 1.02152 0.99772 0.93157 1.70937 1.13228 1.33757 1.38264 0.82908 0.72154 0.74591 0.76364 1.20219 1.18448 1.20715 0.92206 0.86636 0.93145 0.84735 0.84074 0.94279 0.98477 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.19 71.98 0.66 -2.74 15 2 C 0.08 2.30 4.07 45.24 0.18 2.49 15 3 H 0.10 2.88 8.14 -2.39 -0.02 2.86 15 4 C 0.05 1.02 7.88 72.35 0.57 1.59 15 5 O -0.35 -12.77 11.09 -47.26 -0.52 -13.30 15 6 C 0.63 29.91 8.85 129.91 1.15 31.06 15 7 O -0.59 -34.11 17.54 19.63 0.34 -33.77 15 8 N -0.61 -26.88 2.68 -931.84 -2.49 -29.37 15 9 C 0.28 14.58 4.94 85.64 0.42 15.01 15 10 C -0.63 -36.33 9.39 25.60 0.24 -36.08 15 11 H 0.05 2.71 7.81 -2.91 -0.02 2.68 15 12 C -0.03 -1.46 5.46 84.65 0.46 -1.00 15 13 N -0.93 -56.23 13.65 21.45 0.29 -55.94 15 14 Si 1.12 50.23 29.90 68.60 2.05 52.28 15 15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 16 H -0.26 -10.46 7.11 99.48 0.71 -9.76 15 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 18 H 0.06 1.36 8.14 -2.39 -0.02 1.34 15 19 H 0.12 1.58 8.14 -2.39 -0.02 1.56 15 20 H 0.05 1.37 7.31 -2.39 -0.02 1.36 15 21 H 0.13 2.11 8.14 -2.39 -0.02 2.09 15 22 H 0.14 2.01 7.74 -2.39 -0.02 2.00 15 23 H 0.04 1.99 7.08 -2.39 -0.02 1.98 15 24 H 0.00 -0.17 7.79 -2.38 -0.02 -0.18 15 25 H 0.26 15.70 7.22 -92.71 -0.67 15.03 15 Total: -1.00 -76.61 223.47 4.64 -71.96 By element: Atomic # 1 Polarization: -3.47 SS G_CDS: 1.28 Total: -2.19 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 3.69 Total: 10.32 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -2.20 Total: -85.31 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -0.18 Total: -47.06 kcal Atomic # 14 Polarization: 50.23 SS G_CDS: 2.05 Total: 52.28 kcal Total: -76.61 4.64 -71.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049357.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.952 kcal (2) G-P(sol) polarization free energy of solvation -76.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds