Wall clock time and date at job start Mon Mar 30 2020 01:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00172 * 2 1 4 4 H 1.48503 * 109.47031 * 239.99898 * 3 2 1 5 5 H 1.48505 * 109.47150 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47353 * 119.99798 * 3 2 1 7 7 C 1.37881 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00173 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99784 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46764 * 180.02562 * 9 7 2 11 11 N 1.30254 * 125.62348 * 90.00050 * 10 9 7 12 12 C 1.34473 * 108.70370 * 179.73298 * 11 10 9 13 13 C 1.50697 * 126.16646 * 179.97438 * 12 11 10 14 14 F 1.39895 * 109.47476 * 90.02243 * 13 12 11 15 15 C 1.34334 * 107.66703 * 359.97438 * 12 11 10 16 16 O 1.33970 * 125.61642 * 269.68347 * 10 9 7 17 17 H 0.97000 * 120.00097 * 0.02562 * 1 2 3 18 18 H 1.08997 * 109.47072 * 59.99584 * 9 7 2 19 19 H 1.09003 * 109.46985 * 299.99554 * 9 7 2 20 20 H 1.09009 * 109.47109 * 210.02379 * 13 12 11 21 21 H 1.09001 * 109.46902 * 330.01825 * 13 12 11 22 22 H 1.07997 * 126.44323 * 180.02562 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0018 11 7 2.7224 -4.2208 1.0612 12 6 3.5542 -5.2027 0.6710 13 6 4.3353 -6.1191 1.5771 14 9 3.5716 -7.2564 1.8608 15 6 3.5634 -5.2194 -0.6722 16 8 2.7335 -4.2420 -1.0866 17 1 -0.4850 0.8400 -0.0004 18 1 0.6246 -2.5570 -0.8896 19 1 0.6240 -2.5567 0.8904 20 1 5.2604 -6.4166 1.0831 21 1 4.5704 -5.5983 2.5053 22 1 4.1296 -5.8899 -1.3016 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261134633.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:44 Heat of formation + Delta-G solvation = -65.163207 kcal Electronic energy + Delta-G solvation = -10656.840305 eV Core-core repulsion = 8319.764867 eV Total energy + Delta-G solvation = -2337.075438 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 185.059 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -48.63974 -44.22513 -35.99359 -35.57976 -33.00608 -30.22955 -27.53208 -25.64917 -22.57534 -22.00668 -18.82667 -18.19969 -17.52936 -16.79820 -16.65111 -16.53524 -16.39018 -14.82810 -14.73003 -14.35908 -13.60343 -12.94579 -12.69454 -12.61863 -12.29189 -12.16541 -12.01981 -11.69778 -11.46051 -10.68828 -9.74685 -8.30417 -6.45020 0.53273 1.40758 1.44293 1.52135 1.64457 1.95408 2.38771 3.01618 3.08847 3.66303 3.94971 4.01975 4.37017 4.69600 4.84840 4.95648 5.04299 5.17480 5.32541 5.58615 5.91630 6.59998 6.87304 7.23513 8.79978 Molecular weight = 185.06amu Principal moments of inertia in cm(-1) A = 0.075235 B = 0.008944 C = 0.008812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.077435 B = 3129.792657 C = 3176.715959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.111 3.889 10 C 0.222 3.778 11 N -0.520 5.520 12 C -0.097 4.097 13 C 0.156 3.844 14 F -0.224 7.224 15 C -0.057 4.057 16 O -0.214 6.214 17 H 0.272 0.728 18 H 0.038 0.962 19 H 0.043 0.957 20 H 0.141 0.859 21 H 0.093 0.907 22 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.114 -8.725 -0.891 12.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.582 4.582 8 H 0.072 0.928 9 C 0.074 3.926 10 C 0.015 3.985 11 N -0.250 5.250 12 C -0.216 4.216 13 C 0.101 3.899 14 F -0.205 7.205 15 C -0.127 4.127 16 O -0.101 6.101 17 H 0.081 0.919 18 H 0.056 0.944 19 H 0.061 0.939 20 H 0.159 0.841 21 H 0.112 0.888 22 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 8.770 -8.464 -0.300 12.191 hybrid contribution 0.109 0.569 -0.576 0.817 sum 8.879 -7.894 -0.876 11.913 Atomic orbital electron populations 1.70026 1.07539 1.28783 1.49614 1.25872 0.95902 1.03078 0.93716 0.85349 0.78261 0.77394 0.79160 1.19033 1.19921 1.19478 1.21081 0.93108 0.90458 1.53509 0.92762 1.17691 0.90249 0.85843 0.98859 1.27140 0.97404 0.95946 0.78002 1.70350 1.13261 1.10223 1.31211 1.22854 1.03529 1.00369 0.94890 1.20294 0.91072 0.79673 0.98848 1.92767 1.79424 1.53224 1.95092 1.25729 0.97295 0.93588 0.96137 1.84504 1.47860 1.39289 1.38399 0.91890 0.94418 0.93921 0.84099 0.88836 0.71775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.73 13.29 21.45 0.28 -53.44 14 2 C 0.01 0.80 5.46 84.66 0.46 1.26 14 3 Si 0.98 43.31 29.54 68.60 2.03 45.34 14 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 14 5 H -0.27 -11.66 7.11 99.48 0.71 -10.96 14 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 14 7 C -0.54 -31.06 9.09 25.60 0.23 -30.82 14 8 H 0.05 3.08 7.74 -2.91 -0.02 3.06 14 9 C 0.11 6.05 5.60 29.10 0.16 6.21 14 10 C 0.22 10.71 7.53 88.34 0.67 11.37 14 11 N -0.52 -23.94 11.29 -291.98 -3.30 -27.24 14 12 C -0.10 -3.38 6.82 41.26 0.28 -3.10 14 13 C 0.16 3.80 8.09 71.24 0.58 4.38 14 14 F -0.22 -6.46 17.34 44.97 0.78 -5.68 14 15 C -0.06 -1.76 12.08 66.93 0.81 -0.95 14 16 O -0.21 -8.92 10.78 -3.70 -0.04 -8.96 14 17 H 0.27 14.79 8.31 -92.71 -0.77 14.02 14 18 H 0.04 2.08 8.14 -2.39 -0.02 2.06 14 19 H 0.04 2.45 8.14 -2.39 -0.02 2.43 14 20 H 0.14 1.96 8.14 -2.38 -0.02 1.94 14 21 H 0.09 2.21 8.14 -2.39 -0.02 2.19 14 22 H 0.27 4.56 8.06 -2.91 -0.02 4.53 14 Total: -1.00 -68.17 214.91 4.17 -64.00 By element: Atomic # 1 Polarization: -3.60 SS G_CDS: 1.23 Total: -2.37 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 3.19 Total: -11.65 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -3.01 Total: -80.68 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.04 Total: -8.96 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.78 Total: -5.68 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -68.17 4.17 -64.00 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134633.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.165 kcal (2) G-P(sol) polarization free energy of solvation -68.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds