Wall clock time and date at job start Mon Mar 30 2020 01:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99678 * 2 1 4 4 H 1.48506 * 109.46709 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47301 * 299.99939 * 3 2 1 6 6 H 1.48498 * 109.47260 * 60.00333 * 3 2 1 7 7 C 1.37871 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00496 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99906 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.34332 * 126.44280 * 90.00193 * 10 9 7 12 12 N 1.34471 * 107.66856 * 180.02562 * 11 10 9 13 13 C 1.30253 * 108.70602 * 0.02562 * 12 11 10 14 14 C 1.50696 * 125.62276 * 180.26292 * 13 12 11 15 15 F 1.39899 * 109.47021 * 269.69065 * 14 13 12 16 16 O 1.33974 * 108.75653 * 359.97438 * 13 12 11 17 17 H 0.96994 * 120.00420 * 359.97438 * 1 2 3 18 18 H 1.08999 * 109.46674 * 60.00351 * 9 7 2 19 19 H 1.08991 * 109.47356 * 300.00194 * 9 7 2 20 20 H 1.08005 * 126.16232 * 0.02562 * 11 10 9 21 21 H 1.09002 * 109.47145 * 29.69406 * 14 13 12 22 22 H 1.09003 * 109.47052 * 149.69094 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0018 11 6 2.7497 -4.2516 1.0782 12 7 3.5772 -5.2187 0.6443 13 6 3.5759 -5.2163 -0.6582 14 6 4.3670 -6.1492 -1.5384 15 9 5.6154 -5.5819 -1.8160 16 8 2.7505 -4.2518 -1.0864 17 1 -0.4850 0.8400 0.0004 18 1 0.6241 -2.5567 -0.8903 19 1 0.6247 -2.5571 0.8896 20 1 2.5404 -4.0069 2.1091 21 1 4.5063 -7.1013 -1.0263 22 1 3.8273 -6.3139 -2.4710 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261148474.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:53 Heat of formation + Delta-G solvation = -62.991496 kcal Electronic energy + Delta-G solvation = -10688.258827 eV Core-core repulsion = 8351.277561 eV Total energy + Delta-G solvation = -2336.981266 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 185.059 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -48.83070 -44.27223 -35.76204 -35.72479 -33.25467 -30.60932 -27.42776 -25.03354 -23.21084 -22.01887 -18.82625 -18.37488 -17.80402 -16.91070 -16.77976 -16.44453 -16.02880 -15.07202 -14.47792 -14.32280 -13.56619 -13.13910 -12.86200 -12.69615 -12.39567 -12.30959 -12.14172 -11.72781 -11.58881 -10.70713 -9.72767 -8.32407 -6.47112 0.44106 1.38223 1.39250 1.51854 1.62480 1.67541 2.35866 2.90108 3.00565 3.82488 3.91331 4.13982 4.26045 4.44589 4.60828 4.86344 5.11118 5.29351 5.39314 5.58221 5.92954 6.59974 6.64540 7.22470 8.77243 Molecular weight = 185.06amu Principal moments of inertia in cm(-1) A = 0.060389 B = 0.009725 C = 0.009039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.552561 B = 2878.384221 C = 3096.907034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.545 4.545 8 H 0.050 0.950 9 C 0.098 3.902 10 C 0.006 3.994 11 C -0.076 4.076 12 N -0.474 5.474 13 C 0.103 3.897 14 C 0.176 3.824 15 F -0.213 7.213 16 O -0.211 6.211 17 H 0.272 0.728 18 H 0.021 0.979 19 H 0.053 0.947 20 H 0.197 0.803 21 H 0.151 0.849 22 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.447 -9.052 -2.261 10.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.583 4.583 8 H 0.068 0.932 9 C 0.061 3.939 10 C -0.047 4.047 11 C -0.214 4.214 12 N -0.204 5.204 13 C -0.104 4.104 14 C 0.121 3.879 15 F -0.194 7.194 16 O -0.098 6.098 17 H 0.081 0.919 18 H 0.040 0.960 19 H 0.071 0.929 20 H 0.214 0.786 21 H 0.169 0.831 22 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.673 -9.347 -1.960 11.108 hybrid contribution -0.244 1.529 -0.221 1.564 sum 5.430 -7.818 -2.181 9.765 Atomic orbital electron populations 1.70023 1.07384 1.28567 1.49833 1.25823 0.95859 1.02906 0.93827 0.85318 0.78541 0.78363 0.78361 1.19577 1.19852 1.19470 1.21238 0.93022 0.90861 1.53183 0.93154 1.17783 0.90779 0.86629 0.98739 1.24535 0.99438 0.96688 0.84036 1.23203 1.00242 0.96834 1.01152 1.70268 1.19092 1.21166 1.09883 1.27597 0.97247 0.94064 0.91526 1.20572 0.77068 0.91053 0.99165 1.92823 1.44108 1.87616 1.94883 1.84397 1.47949 1.39859 1.37548 0.91939 0.96042 0.92880 0.78561 0.83106 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.71 13.29 21.44 0.28 -52.43 14 2 C 0.02 0.88 5.46 84.65 0.46 1.34 14 3 Si 0.97 43.28 29.54 68.60 2.03 45.31 14 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 14 5 H -0.27 -11.78 7.11 99.48 0.71 -11.08 14 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 14 7 C -0.55 -30.71 9.09 25.60 0.23 -30.48 14 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 14 9 C 0.10 5.09 5.53 29.10 0.16 5.25 14 10 C 0.01 0.29 6.58 24.79 0.16 0.46 14 11 C -0.08 -3.18 11.80 83.40 0.98 -2.20 14 12 N -0.47 -18.47 11.29 -303.82 -3.43 -21.90 14 13 C 0.10 3.66 8.06 88.34 0.71 4.37 14 14 C 0.18 3.92 8.17 71.23 0.58 4.50 14 15 F -0.21 -5.93 17.34 44.97 0.78 -5.15 14 16 O -0.21 -9.06 10.78 -3.76 -0.04 -9.10 14 17 H 0.27 14.47 8.31 -92.71 -0.77 13.70 14 18 H 0.02 1.17 8.14 -2.39 -0.02 1.15 14 19 H 0.05 2.76 8.14 -2.39 -0.02 2.74 14 20 H 0.20 7.25 8.06 -2.91 -0.02 7.22 14 21 H 0.15 2.26 8.14 -2.39 -0.02 2.24 14 22 H 0.14 2.09 8.14 -2.39 -0.02 2.07 14 Total: -1.00 -65.35 214.92 4.14 -61.21 By element: Atomic # 1 Polarization: -2.42 SS G_CDS: 1.23 Total: -1.19 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 3.30 Total: -16.75 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -3.15 Total: -74.32 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.04 Total: -9.10 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.78 Total: -5.15 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -65.35 4.14 -61.21 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148474.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.780 kcal (2) G-P(sol) polarization free energy of solvation -65.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds