Wall clock time and date at job start Mon Mar 30 2020 01:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99762 * 2 1 4 4 H 1.48499 * 109.46910 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47151 * 299.99911 * 3 2 1 6 6 H 1.48498 * 109.46904 * 60.00294 * 3 2 1 7 7 C 1.37879 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00030 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47075 * 180.02562 * 9 7 2 11 11 N 1.30253 * 125.62276 * 89.69163 * 10 9 7 12 12 C 1.34471 * 108.70602 * 180.26292 * 11 10 9 13 13 C 1.34332 * 107.66856 * 0.02562 * 12 11 10 14 14 C 1.50699 * 126.44280 * 180.02562 * 13 12 11 15 15 F 1.39899 * 109.47032 * 90.00412 * 14 13 12 16 16 O 1.33974 * 125.62013 * 270.00120 * 10 9 7 17 17 H 0.96995 * 120.00150 * 359.97438 * 1 2 3 18 18 H 1.09003 * 109.47332 * 60.00165 * 9 7 2 19 19 H 1.09000 * 109.47267 * 300.00046 * 9 7 2 20 20 H 1.08005 * 126.16912 * 180.02562 * 12 11 10 21 21 H 1.08999 * 109.46894 * 209.99509 * 14 13 12 22 22 H 1.08991 * 109.47321 * 329.99779 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 7 2.7278 -4.2175 1.0582 12 6 3.5667 -5.1929 0.6669 13 6 3.5758 -5.2082 -0.6763 14 6 4.3726 -6.1373 -1.5555 15 9 3.6193 -7.2850 -1.8246 16 8 2.7375 -4.2376 -1.0896 17 1 -0.4850 0.8400 0.0004 18 1 0.6241 -2.5568 -0.8903 19 1 0.6248 -2.5571 0.8897 20 1 4.1313 -5.8462 1.3156 21 1 4.6142 -5.6336 -2.4915 22 1 5.2941 -6.4186 -1.0459 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261149361.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:52 Heat of formation + Delta-G solvation = -40.824590 kcal Electronic energy + Delta-G solvation = -10666.168067 eV Core-core repulsion = 8330.148031 eV Total energy + Delta-G solvation = -2336.020036 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 185.059 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -47.67810 -42.60722 -34.12980 -33.53105 -31.60028 -29.10397 -25.51694 -23.35544 -21.60530 -20.32611 -16.92049 -16.65759 -16.18709 -15.76743 -15.23692 -15.08747 -14.55290 -13.06948 -12.88760 -12.36052 -11.93857 -11.52351 -11.26491 -10.94633 -10.81624 -10.65352 -10.12132 -9.81003 -9.66157 -8.59328 -8.17998 -6.21349 -4.26614 1.96578 3.20102 3.24024 3.30474 3.34855 3.41575 4.33266 4.71013 4.79865 4.91428 5.06908 5.16865 5.54196 5.59620 6.32224 6.51367 6.92336 7.19805 7.22678 7.72653 7.98730 8.49385 8.74092 9.37602 10.89004 Molecular weight = 185.06amu Principal moments of inertia in cm(-1) A = 0.077565 B = 0.008922 C = 0.008771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.901731 B = 3137.645651 C = 3191.745029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.101 3.899 10 C 0.267 3.733 11 N -0.514 5.514 12 C -0.005 4.005 13 C -0.150 4.150 14 C 0.164 3.836 15 F -0.209 7.209 16 O -0.198 6.198 17 H 0.266 0.734 18 H 0.051 0.949 19 H 0.068 0.932 20 H 0.176 0.824 21 H 0.090 0.910 22 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.222 -8.217 -2.425 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.560 4.560 8 H 0.079 0.921 9 C 0.063 3.937 10 C 0.062 3.938 11 N -0.242 5.242 12 C -0.144 4.144 13 C -0.204 4.204 14 C 0.109 3.891 15 F -0.190 7.190 16 O -0.086 6.086 17 H 0.076 0.924 18 H 0.070 0.930 19 H 0.086 0.914 20 H 0.193 0.807 21 H 0.108 0.892 22 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.880 -7.940 -1.857 10.668 hybrid contribution 0.625 0.577 -0.588 1.034 sum 7.505 -7.362 -2.445 10.793 Atomic orbital electron populations 1.69940 1.06039 1.27395 1.49354 1.24957 0.95005 0.99469 0.94521 0.86298 0.79964 0.82599 0.77800 1.19616 1.20694 1.20616 1.20883 0.93280 0.89027 1.52767 0.92064 1.18156 0.89987 0.84795 1.00766 1.27980 0.94642 0.94186 0.77004 1.70608 1.13053 1.09839 1.30697 1.23105 1.00132 0.98749 0.92463 1.23425 1.03158 0.97980 0.95816 1.19963 0.90397 0.79764 0.98974 1.92826 1.79224 1.51784 1.95195 1.84453 1.46665 1.38567 1.38887 0.92392 0.93046 0.91402 0.80691 0.89169 0.87767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 13.29 55.43 0.74 -24.71 14 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 14 3 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 14 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 14 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 14 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 14 7 C -0.52 -14.55 9.09 -34.44 -0.31 -14.87 14 8 H 0.06 1.72 7.74 -52.49 -0.41 1.31 14 9 C 0.10 2.62 5.60 -29.04 -0.16 2.46 14 10 C 0.27 6.38 7.53 -12.95 -0.10 6.28 14 11 N -0.51 -11.78 11.29 -11.10 -0.13 -11.90 14 12 C 0.00 -0.08 11.80 -17.77 -0.21 -0.29 14 13 C -0.15 -2.69 7.10 -35.69 -0.25 -2.94 14 14 C 0.16 2.04 8.10 36.01 0.29 2.33 14 15 F -0.21 -3.02 17.34 2.25 0.04 -2.98 14 16 O -0.20 -4.34 10.78 5.35 0.06 -4.28 14 17 H 0.27 7.13 8.31 -40.82 -0.34 6.79 14 18 H 0.05 1.35 8.14 -51.93 -0.42 0.92 14 19 H 0.07 1.82 8.14 -51.93 -0.42 1.40 14 20 H 0.18 2.45 8.06 -52.48 -0.42 2.03 14 21 H 0.09 0.97 8.14 -51.93 -0.42 0.55 14 22 H 0.10 0.89 8.14 -51.93 -0.42 0.47 14 LS Contribution 214.92 15.07 3.24 3.24 Total: -1.00 -30.80 214.92 -3.57 -34.37 By element: Atomic # 1 Polarization: -2.84 SS G_CDS: -1.65 Total: -4.50 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -0.84 Total: -5.38 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.61 Total: -36.61 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: 0.06 Total: -4.28 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.98 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -30.80 -3.57 -34.37 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149361.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.456 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds