Wall clock time and date at job start Mon Mar 30 2020 01:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99762 * 2 1 4 4 H 1.48499 * 109.46910 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47151 * 299.99911 * 3 2 1 6 6 H 1.48498 * 109.46904 * 60.00294 * 3 2 1 7 7 C 1.37879 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00030 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47075 * 180.02562 * 9 7 2 11 11 N 1.30253 * 125.62276 * 89.69163 * 10 9 7 12 12 C 1.34471 * 108.70602 * 180.26292 * 11 10 9 13 13 C 1.34332 * 107.66856 * 0.02562 * 12 11 10 14 14 C 1.50699 * 126.44280 * 180.02562 * 13 12 11 15 15 F 1.39899 * 109.47032 * 90.00412 * 14 13 12 16 16 O 1.33974 * 125.62013 * 270.00120 * 10 9 7 17 17 H 0.96995 * 120.00150 * 359.97438 * 1 2 3 18 18 H 1.09003 * 109.47332 * 60.00165 * 9 7 2 19 19 H 1.09000 * 109.47267 * 300.00046 * 9 7 2 20 20 H 1.08005 * 126.16912 * 180.02562 * 12 11 10 21 21 H 1.08999 * 109.46894 * 209.99509 * 14 13 12 22 22 H 1.08991 * 109.47321 * 329.99779 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 7 2.7278 -4.2175 1.0582 12 6 3.5667 -5.1929 0.6669 13 6 3.5758 -5.2082 -0.6763 14 6 4.3726 -6.1373 -1.5555 15 9 3.6193 -7.2850 -1.8246 16 8 2.7375 -4.2376 -1.0896 17 1 -0.4850 0.8400 0.0004 18 1 0.6241 -2.5568 -0.8903 19 1 0.6248 -2.5571 0.8897 20 1 4.1313 -5.8462 1.3156 21 1 4.6142 -5.6336 -2.4915 22 1 5.2941 -6.4186 -1.0459 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261149361.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:52 Heat of formation + Delta-G solvation = -63.209866 kcal Electronic energy + Delta-G solvation = -10667.138765 eV Core-core repulsion = 8330.148031 eV Total energy + Delta-G solvation = -2336.990735 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 185.059 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -48.74563 -44.23597 -35.89799 -35.47031 -33.23856 -30.83665 -27.10514 -25.20325 -23.17828 -22.01132 -18.85897 -18.17887 -17.70397 -16.85582 -16.80897 -16.41863 -16.30128 -14.75599 -14.44576 -14.37491 -13.73396 -13.03306 -12.84722 -12.66133 -12.34915 -12.29067 -12.10621 -11.67339 -11.42693 -10.70721 -9.77322 -8.31987 -6.46660 0.40447 1.40531 1.41391 1.54169 1.70065 1.76147 2.37769 3.01325 3.28650 3.59349 3.88235 3.99380 4.12705 4.57769 4.85016 4.93167 5.05048 5.14862 5.36093 5.57412 5.89254 6.58651 6.83500 7.22128 8.78867 Molecular weight = 185.06amu Principal moments of inertia in cm(-1) A = 0.077565 B = 0.008922 C = 0.008771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.901731 B = 3137.645651 C = 3191.745029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.542 4.542 8 H 0.054 0.946 9 C 0.109 3.891 10 C 0.233 3.767 11 N -0.532 5.532 12 C -0.018 4.018 13 C -0.139 4.139 14 C 0.165 3.835 15 F -0.219 7.219 16 O -0.213 6.213 17 H 0.272 0.728 18 H 0.037 0.963 19 H 0.047 0.953 20 H 0.221 0.779 21 H 0.110 0.890 22 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.157 -8.630 -2.687 12.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.800 3.200 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.072 0.928 9 C 0.071 3.929 10 C 0.027 3.973 11 N -0.261 5.261 12 C -0.157 4.157 13 C -0.192 4.192 14 C 0.110 3.890 15 F -0.200 7.200 16 O -0.101 6.101 17 H 0.082 0.918 18 H 0.055 0.945 19 H 0.065 0.935 20 H 0.238 0.762 21 H 0.128 0.872 22 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.815 -8.373 -2.134 12.344 hybrid contribution 0.065 0.575 -0.515 0.774 sum 8.880 -7.798 -2.649 12.111 Atomic orbital electron populations 1.70036 1.07519 1.28708 1.49627 1.25876 0.95917 1.03087 0.93668 0.85224 0.78543 0.77881 0.78340 1.19260 1.19533 1.19737 1.21117 0.93088 0.90374 1.53503 0.92810 1.17755 0.90275 0.85786 0.99036 1.27299 0.96475 0.95420 0.78068 1.70529 1.13789 1.10940 1.30886 1.23830 0.99893 0.98374 0.93582 1.24638 1.01083 0.96531 0.96960 1.20514 0.90367 0.78327 0.99751 1.92808 1.79790 1.52159 1.95252 1.84425 1.47435 1.39619 1.38623 0.91847 0.94499 0.93477 0.76249 0.87164 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.52 13.29 21.45 0.28 -53.23 14 2 C 0.01 0.81 5.46 84.66 0.46 1.27 14 3 Si 0.98 43.33 29.54 68.60 2.03 45.36 14 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 14 5 H -0.27 -11.45 7.11 99.48 0.71 -10.75 14 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 14 7 C -0.54 -31.07 9.09 25.60 0.23 -30.84 14 8 H 0.05 3.08 7.74 -2.91 -0.02 3.06 14 9 C 0.11 5.95 5.60 29.10 0.16 6.11 14 10 C 0.23 11.37 7.53 88.34 0.67 12.03 14 11 N -0.53 -24.32 11.29 -303.82 -3.43 -27.75 14 12 C -0.02 -0.62 11.80 83.40 0.98 0.36 14 13 C -0.14 -4.68 7.10 24.79 0.18 -4.50 14 14 C 0.16 3.43 8.10 71.24 0.58 4.00 14 15 F -0.22 -5.62 17.34 44.97 0.78 -4.84 14 16 O -0.21 -9.34 10.78 -3.76 -0.04 -9.38 14 17 H 0.27 14.67 8.31 -92.71 -0.77 13.90 14 18 H 0.04 2.05 8.14 -2.39 -0.02 2.03 14 19 H 0.05 2.69 8.14 -2.39 -0.02 2.67 14 20 H 0.22 5.28 8.06 -2.91 -0.02 5.26 14 21 H 0.11 1.92 8.14 -2.39 -0.02 1.90 14 22 H 0.16 1.75 8.14 -2.39 -0.02 1.73 14 Total: -1.00 -67.61 214.92 4.11 -63.51 By element: Atomic # 1 Polarization: -3.33 SS G_CDS: 1.23 Total: -2.10 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 3.26 Total: -11.55 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -3.15 Total: -80.98 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.04 Total: -9.38 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.78 Total: -4.84 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -67.61 4.11 -63.51 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149361.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.296 kcal (2) G-P(sol) polarization free energy of solvation -67.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds