Wall clock time and date at job start Mon Mar 30 2020 01:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00023 * 2 1 4 4 H 1.48501 * 109.47363 * 240.00489 * 3 2 1 5 5 H 1.48496 * 109.46874 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47163 * 120.00336 * 3 2 1 7 7 C 1.38815 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00044 * 191.49033 * 7 2 1 9 9 N 1.36932 * 120.00183 * 11.48351 * 7 2 1 10 10 C 1.47545 * 121.57061 * 204.23988 * 9 7 2 11 11 C 1.53711 * 107.48112 * 221.38537 * 10 9 7 12 12 H 1.08999 * 113.64730 * 164.16962 * 11 10 9 13 13 C 1.53415 * 112.10446 * 295.07054 * 11 10 9 14 14 C 1.53423 * 88.93136 * 77.34393 * 13 11 10 15 15 H 1.09001 * 113.87491 * 151.87117 * 14 13 11 16 16 C 1.49354 * 121.62137 * 23.78516 * 9 7 2 17 17 S 1.81755 * 88.71389 * 36.22784 * 14 13 11 18 18 H 0.97000 * 120.00019 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.85391 * 101.88813 * 10 9 7 20 20 H 1.08999 * 109.90975 * 340.91371 * 10 9 7 21 21 H 1.08999 * 113.28974 * 322.35937 * 13 11 10 22 22 H 1.08998 * 113.28269 * 192.32488 * 13 11 10 23 23 H 1.08997 * 109.67092 * 19.56103 * 16 9 7 24 24 H 1.09003 * 110.94071 * 257.96897 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0741 -1.2116 0.1858 9 7 1.3463 -2.3761 -0.2371 10 6 1.8655 -3.6688 0.2490 11 6 1.6576 -4.7006 -0.8713 12 1 2.2392 -5.6128 -0.7389 13 6 0.1712 -4.9482 -1.1595 14 6 0.1295 -3.6225 -1.9307 15 1 -0.6203 -3.5955 -2.7214 16 6 0.0571 -2.4084 -0.9907 17 16 1.8132 -3.9623 -2.5249 18 1 -0.4850 0.8400 0.0004 19 1 1.3190 -3.9754 1.1408 20 1 2.9274 -3.5798 0.4780 21 1 -0.4481 -4.9445 -0.2626 22 1 -0.0061 -5.8193 -1.7902 23 1 -0.0497 -1.4941 -1.5744 24 1 -0.7886 -2.5160 -0.3114 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261152813.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:18 Heat of formation + Delta-G solvation = 53.464770 kcal Electronic energy + Delta-G solvation = -9798.566831 eV Core-core repulsion = 8032.848665 eV Total energy + Delta-G solvation = -1765.718167 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 185.057 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.04642 -33.42188 -30.53764 -29.13195 -25.45316 -22.00742 -21.69610 -20.03118 -17.13670 -15.16345 -14.54798 -14.37360 -13.46118 -13.43073 -12.87127 -12.55090 -12.38109 -11.62740 -11.02718 -10.76827 -10.46012 -10.43960 -9.99732 -9.86597 -9.48331 -9.23086 -8.51829 -6.88363 -6.78104 -5.77642 -3.16432 2.56815 2.72145 3.41776 3.46497 3.49005 4.50596 4.86440 5.20087 5.40346 5.54356 5.63488 5.81209 5.98638 6.08070 6.13708 6.42758 6.59892 6.62121 7.19508 7.49857 7.78408 8.33506 9.15313 9.78744 10.37335 11.33871 Molecular weight = 185.06amu Principal moments of inertia in cm(-1) A = 0.068017 B = 0.014457 C = 0.014077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.566001 B = 1936.356685 C = 1988.640034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.590 5.590 10 C 0.157 3.843 11 C -0.058 4.058 12 H 0.092 0.908 13 C -0.122 4.122 14 C -0.065 4.065 15 H 0.089 0.911 16 C 0.192 3.808 17 S -0.316 6.316 18 H 0.254 0.746 19 H 0.035 0.965 20 H 0.060 0.940 21 H 0.082 0.918 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 -7.642 -1.195 7.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.739 3.261 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.364 4.364 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.029 3.971 11 C -0.189 4.189 12 H 0.110 0.890 13 C -0.161 4.161 14 C -0.195 4.195 15 H 0.108 0.892 16 C 0.065 3.935 17 S -0.089 6.089 18 H 0.064 0.936 19 H 0.052 0.948 20 H 0.078 0.922 21 H 0.101 0.899 22 H 0.104 0.896 23 H 0.109 0.891 24 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.523 -7.268 -2.332 7.651 hybrid contribution -0.251 0.723 0.761 1.079 sum 0.272 -6.545 -1.571 6.736 Atomic orbital electron populations 1.69924 1.05131 1.25560 1.55615 1.24968 0.95500 0.98175 1.01280 0.86263 0.78714 0.83080 0.78088 1.21018 1.21656 1.20980 1.19090 0.91136 0.83575 1.42555 0.91346 1.44766 1.23700 1.01479 1.61403 1.21075 0.98427 0.85884 0.91758 1.24805 0.98511 1.01204 0.94381 0.88992 1.23159 0.95297 0.96993 1.00644 1.25123 0.93646 1.00556 1.00158 0.89219 1.21341 0.87815 0.93051 0.91273 1.88493 1.24346 1.75298 1.20784 0.93566 0.94754 0.92157 0.89927 0.89566 0.89091 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.43 10.89 55.49 0.60 -25.83 14 2 C 0.00 -0.06 5.13 -17.43 -0.09 -0.15 14 3 Si 0.91 22.14 29.57 -169.99 -5.03 17.11 14 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 14 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 14 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 14 7 C -0.23 -6.51 9.80 -15.06 -0.15 -6.66 14 8 H 0.07 1.88 7.86 -52.48 -0.41 1.47 14 9 N -0.59 -14.85 2.60 -169.17 -0.44 -15.29 14 10 C 0.16 3.26 6.54 -3.10 -0.02 3.24 14 11 C -0.06 -1.06 4.80 -26.15 -0.13 -1.18 14 12 H 0.09 1.43 8.14 -51.93 -0.42 1.01 14 13 C -0.12 -1.99 6.94 -26.30 -0.18 -2.17 14 14 C -0.06 -1.26 4.75 -26.14 -0.12 -1.39 14 15 H 0.09 1.60 8.14 -51.93 -0.42 1.17 14 16 C 0.19 4.56 5.07 -2.08 -0.01 4.55 14 17 S -0.32 -6.56 23.67 -107.50 -2.54 -9.11 14 18 H 0.25 7.14 8.31 -40.82 -0.34 6.80 14 19 H 0.03 0.69 8.14 -51.93 -0.42 0.27 14 20 H 0.06 1.24 8.03 -51.93 -0.42 0.82 14 21 H 0.08 1.28 8.13 -51.93 -0.42 0.86 14 22 H 0.09 1.21 8.14 -51.93 -0.42 0.79 14 23 H 0.09 2.44 6.50 -51.93 -0.34 2.11 14 24 H 0.05 1.09 8.14 -51.93 -0.42 0.67 14 LS Contribution 210.63 15.07 3.17 3.17 Total: -1.00 -29.58 210.63 -7.77 -37.35 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: -2.84 Total: -3.66 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -0.70 Total: -3.75 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.16 Total: -41.12 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Atomic # 16 Polarization: -6.56 SS G_CDS: -2.54 Total: -9.11 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -29.58 -7.77 -37.35 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152813.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.818 kcal (2) G-P(sol) polarization free energy of solvation -29.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds