Wall clock time and date at job start Mon Mar 30 2020 02:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46085 * 118.73085 * 2 1 4 4 C 1.53017 * 109.92390 * 198.38145 * 3 2 1 5 5 O 1.43245 * 108.67134 * 310.83781 * 4 3 2 6 6 C 1.42966 * 112.98438 * 68.36595 * 5 4 3 7 7 H 1.08995 * 109.41803 * 70.43479 * 6 5 4 8 8 C 1.50699 * 109.41256 * 190.30094 * 6 5 4 9 9 H 1.07999 * 120.00803 * 120.13645 * 8 6 5 10 10 C 1.37881 * 119.99889 * 300.13466 * 8 6 5 11 11 N 1.31520 * 120.00186 * 180.02562 * 10 8 6 12 12 Si 1.86798 * 120.00030 * 0.02562 * 10 8 6 13 13 H 1.48506 * 109.47297 * 89.99863 * 12 10 8 14 14 H 1.48503 * 109.47261 * 330.00044 * 12 10 8 15 15 H 1.48500 * 109.47454 * 210.00037 * 12 10 8 16 16 C 1.33768 * 118.75582 * 179.97438 * 2 1 3 17 17 O 1.21280 * 118.76200 * 358.10303 * 16 2 1 18 18 H 1.09003 * 109.47255 * 89.99616 * 1 2 3 19 19 H 1.08990 * 109.47244 * 209.99945 * 1 2 3 20 20 H 1.09001 * 109.46885 * 329.99963 * 1 2 3 21 21 H 1.09003 * 109.39613 * 78.24512 * 3 2 1 22 22 H 1.09000 * 109.39774 * 318.52462 * 3 2 1 23 23 H 1.09004 * 109.60599 * 191.08427 * 4 3 2 24 24 H 1.09002 * 109.60553 * 70.59432 * 4 3 2 25 25 H 0.96998 * 120.00124 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1673 1.2810 0.0000 4 6 3.6150 1.0820 -0.4536 5 8 4.1834 -0.0028 0.2894 6 6 3.6083 -1.2688 -0.0429 7 1 3.9239 -1.5583 -1.0452 8 6 4.0728 -2.3053 0.9476 9 1 3.3518 -2.8386 1.5494 10 6 5.4183 -2.5730 1.0854 11 7 5.8237 -3.4779 1.9494 12 14 6.6655 -1.6503 0.0450 13 1 7.0910 -0.4191 0.7581 14 1 6.0497 -1.2815 -1.2550 15 1 7.8475 -2.5166 -0.1953 16 6 2.1086 -1.1727 0.0005 17 8 1.4577 -2.1955 0.0362 18 1 -0.3634 0.0001 -1.0277 19 1 -0.3633 -0.8899 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 2.1576 1.6991 1.0066 22 1 1.6658 1.9687 -0.6809 23 1 4.1853 1.9919 -0.2665 24 1 3.6358 0.8470 -1.5178 25 1 6.7703 -3.6659 2.0467 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261266160.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:16 Heat of formation + Delta-G solvation = -94.836281 kcal Electronic energy + Delta-G solvation = -11763.875943 eV Core-core repulsion = 9548.974089 eV Total energy + Delta-G solvation = -2214.901854 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.47443 -38.48975 -36.53560 -34.71618 -31.46226 -30.13040 -27.72496 -24.78915 -24.30179 -20.03530 -19.37492 -18.39527 -17.77883 -16.83661 -16.32263 -16.07201 -15.43818 -14.95440 -14.77499 -13.97352 -13.78163 -13.52406 -13.08780 -12.85324 -12.72131 -12.22722 -11.94821 -11.69689 -11.15947 -10.88731 -10.15861 -9.71252 -8.41589 -6.60273 1.37096 1.45939 1.53892 1.60040 2.01648 2.34341 2.73956 3.38508 3.63128 3.97009 4.25939 4.33725 4.47072 4.51915 4.62627 4.73975 4.88212 4.95037 5.17130 5.48228 6.01586 6.17637 6.48518 6.54959 7.10225 7.19597 8.73104 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.053945 B = 0.016696 C = 0.013592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.924603 B = 1676.667539 C = 2059.580020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.618 5.618 3 C 0.083 3.917 4 C 0.019 3.981 5 O -0.397 6.397 6 C 0.184 3.816 7 H 0.056 0.944 8 C -0.528 4.528 9 H 0.032 0.968 10 C 0.029 3.971 11 N -0.932 5.932 12 Si 0.982 3.018 13 H -0.261 1.261 14 H -0.250 1.250 15 H -0.289 1.289 16 C 0.494 3.506 17 O -0.587 6.587 18 H 0.069 0.931 19 H 0.048 0.952 20 H 0.105 0.895 21 H 0.078 0.922 22 H 0.126 0.874 23 H 0.140 0.860 24 H 0.063 0.937 25 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.861 14.618 -7.274 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.352 5.352 3 C -0.038 4.038 4 C -0.058 4.058 5 O -0.317 6.317 6 C 0.125 3.875 7 H 0.073 0.927 8 C -0.565 4.565 9 H 0.051 0.949 10 C -0.172 4.172 11 N -0.570 5.570 12 Si 0.806 3.194 13 H -0.186 1.186 14 H -0.174 1.174 15 H -0.216 1.216 16 C 0.283 3.717 17 O -0.467 6.467 18 H 0.088 0.912 19 H 0.067 0.933 20 H 0.123 0.877 21 H 0.097 0.903 22 H 0.144 0.856 23 H 0.158 0.842 24 H 0.081 0.919 25 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.934 14.048 -7.034 16.467 hybrid contribution 0.221 -0.315 -0.043 0.387 sum -4.713 13.733 -7.077 16.152 Atomic orbital electron populations 1.21799 0.78326 1.03468 1.02732 1.47636 1.08316 1.06270 1.72951 1.22389 0.93332 0.84102 1.04020 1.23328 0.93671 0.92480 0.96291 1.88336 1.62457 1.15933 1.65005 1.20012 0.85921 0.83893 0.97715 0.92715 1.20704 0.93506 1.18414 1.23882 0.94945 1.26047 1.00586 0.94592 0.96001 1.70041 1.17103 1.33457 1.36387 0.85181 0.76465 0.78036 0.79737 1.18587 1.17351 1.21588 1.21317 0.92191 0.83432 0.74765 1.90561 1.68198 1.36289 1.51663 0.91239 0.93344 0.87680 0.90328 0.85639 0.84208 0.91889 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.14 10.34 127.77 1.32 3.46 15 2 N -0.62 -21.50 3.23 -849.75 -2.74 -24.24 15 3 C 0.08 2.03 6.63 86.46 0.57 2.61 15 4 C 0.02 0.52 6.90 71.99 0.50 1.02 15 5 O -0.40 -17.35 8.17 -148.98 -1.22 -18.57 15 6 C 0.18 9.33 2.23 28.99 0.06 9.39 15 7 H 0.06 2.74 7.20 -2.39 -0.02 2.73 15 8 C -0.53 -33.09 9.11 25.60 0.23 -32.86 15 9 H 0.03 2.33 7.68 -2.91 -0.02 2.31 15 10 C 0.03 1.73 5.47 84.65 0.46 2.20 15 11 N -0.93 -59.82 13.96 21.45 0.30 -59.52 15 12 Si 0.98 46.45 26.16 68.60 1.79 48.25 15 13 H -0.26 -11.81 7.11 99.48 0.71 -11.10 15 14 H -0.25 -10.84 6.54 99.48 0.65 -10.19 15 15 H -0.29 -13.16 7.11 99.48 0.71 -12.45 15 16 C 0.49 23.69 7.11 87.70 0.62 24.32 15 17 O -0.59 -32.77 15.61 -3.03 -0.05 -32.82 15 18 H 0.07 1.62 8.14 -2.39 -0.02 1.60 15 19 H 0.05 1.61 7.23 -2.39 -0.02 1.59 15 20 H 0.10 1.96 8.04 -2.39 -0.02 1.94 15 21 H 0.08 1.82 8.14 -2.39 -0.02 1.80 15 22 H 0.13 1.85 8.13 -2.39 -0.02 1.83 15 23 H 0.14 2.81 8.14 -2.39 -0.02 2.79 15 24 H 0.06 1.63 8.10 -2.39 -0.02 1.61 15 25 H 0.28 16.16 8.31 -92.71 -0.77 15.39 15 Total: -1.00 -79.93 214.76 2.98 -76.95 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: 1.12 Total: -0.17 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 3.77 Total: 10.13 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -2.44 Total: -83.77 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -1.26 Total: -51.39 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.79 Total: 48.25 kcal Total: -79.93 2.98 -76.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266160.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.884 kcal (2) G-P(sol) polarization free energy of solvation -79.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds