Wall clock time and date at job start Mon Mar 30 2020 01:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39222 * 125.95648 * 2 1 4 4 C 1.39771 * 107.09035 * 180.02562 * 3 2 1 5 5 C 1.39900 * 126.34194 * 179.97438 * 4 3 2 6 6 H 1.08008 * 119.99995 * 359.97438 * 5 4 3 7 7 C 1.40024 * 120.00157 * 180.02562 * 5 4 3 8 8 N 1.30898 * 120.00146 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00184 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46968 * 89.99872 * 9 7 5 11 11 H 1.48500 * 109.46968 * 209.99833 * 9 7 5 12 12 H 1.48489 * 109.47256 * 330.00066 * 9 7 5 13 13 N 1.38120 * 107.31468 * 359.97438 * 4 3 2 14 14 H 0.97001 * 125.75051 * 179.97438 * 13 4 3 15 15 C 1.36199 * 125.95066 * 180.33323 * 2 1 3 16 16 Cl 1.73600 * 125.49896 * 359.97438 * 15 2 1 17 17 H 1.08999 * 109.47535 * 89.99811 * 1 2 3 18 18 H 1.09000 * 109.47394 * 210.00091 * 1 2 3 19 19 H 1.09002 * 109.46501 * 329.99821 * 1 2 3 20 20 H 1.07999 * 126.45308 * 359.97438 * 3 2 1 21 21 H 0.96991 * 120.00230 * 180.02562 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3245 1.1270 0.0000 4 6 3.6472 0.6750 -0.0006 5 6 4.7961 1.4733 -0.0013 6 1 4.7058 2.5496 -0.0019 7 6 6.0630 0.8769 -0.0024 8 7 6.1724 -0.4275 -0.0022 9 14 7.5971 1.9428 -0.0041 10 1 8.0049 2.2255 1.3956 11 1 8.6947 1.2293 -0.7050 12 1 7.3111 3.2208 -0.7040 13 7 3.6098 -0.7057 -0.0004 14 1 4.3814 -1.2935 -0.0010 15 6 2.3067 -1.1025 -0.0064 16 17 1.7544 -2.7483 -0.0154 17 1 -0.3634 0.0000 -1.0276 18 1 -0.3634 -0.8900 0.5138 19 1 -0.3632 0.8900 0.5139 20 1 1.9982 2.1564 -0.0004 21 1 7.0499 -0.8406 -0.0026 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261285334.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:57 Heat of formation + Delta-G solvation = -8.823483 kcal Electronic energy + Delta-G solvation = -9091.945125 eV Core-core repulsion = 7185.649136 eV Total energy + Delta-G solvation = -1906.295989 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 185.030 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.00284 -37.18257 -35.49186 -32.83846 -30.73079 -27.77186 -25.70749 -21.45749 -20.28117 -19.19228 -17.58434 -16.44674 -15.11216 -14.80087 -14.51076 -13.80029 -13.51540 -13.41835 -12.98773 -12.71094 -12.68775 -12.31736 -12.21602 -11.77702 -11.67973 -11.16953 -9.16215 -8.82845 -8.80536 -6.29567 1.27324 1.36115 1.41278 1.55985 1.83287 2.20669 2.22885 3.33638 3.43562 4.61913 4.74091 5.03546 5.09131 5.22313 5.37664 5.48290 5.78589 5.97793 6.15419 6.69099 6.80963 7.04790 7.52500 8.28433 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.067366 B = 0.012451 C = 0.010569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.539011 B = 2248.195712 C = 2648.584290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.124 4.124 3 C -0.356 4.356 4 C 0.212 3.788 5 C -0.477 4.477 6 H 0.098 0.902 7 C 0.025 3.975 8 N -0.874 5.874 9 Si 1.007 2.993 10 H -0.263 1.263 11 H -0.270 1.270 12 H -0.256 1.256 13 N -0.559 5.559 14 H 0.417 0.583 15 C -0.061 4.061 16 Cl -0.057 7.057 17 H 0.063 0.937 18 H 0.060 0.940 19 H 0.067 0.933 20 H 0.120 0.880 21 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 -0.325 -0.014 1.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.133 4.133 3 C -0.379 4.379 4 C 0.096 3.904 5 C -0.512 4.512 6 H 0.116 0.884 7 C -0.185 4.185 8 N -0.506 5.506 9 Si 0.828 3.172 10 H -0.188 1.188 11 H -0.195 1.195 12 H -0.180 1.180 13 N -0.170 5.170 14 H 0.264 0.736 15 C -0.194 4.194 16 Cl -0.030 7.030 17 H 0.082 0.918 18 H 0.079 0.921 19 H 0.086 0.914 20 H 0.138 0.862 21 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.652 -0.810 -0.015 1.840 hybrid contribution 0.970 -0.319 0.002 1.021 sum -0.682 -1.129 -0.013 1.320 Atomic orbital electron populations 1.20100 0.88957 1.01883 1.01501 1.19183 0.95915 0.90414 1.07796 1.20784 0.91280 0.96906 1.28883 1.18486 0.94834 0.80947 0.96143 1.19150 0.89413 0.95168 1.47498 0.88366 1.26910 1.04255 0.96576 0.90773 1.68866 1.28264 1.12064 1.41453 0.84785 0.74812 0.78281 0.79339 1.18805 1.19468 1.17962 1.42858 1.05820 1.07433 1.60883 0.73578 1.20622 0.86064 0.84472 1.28291 1.98209 1.87901 1.18630 1.98213 0.91802 0.92105 0.91427 0.86156 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.44 10.18 71.24 0.72 -1.72 14 2 C -0.12 -5.88 6.10 -20.10 -0.12 -6.00 14 3 C -0.36 -18.35 10.83 22.88 0.25 -18.10 14 4 C 0.21 11.72 6.71 38.93 0.26 11.98 14 5 C -0.48 -25.47 9.33 23.11 0.22 -25.25 14 6 H 0.10 4.96 7.85 -2.91 -0.02 4.93 14 7 C 0.02 1.21 5.50 85.27 0.47 1.68 14 8 N -0.87 -44.10 10.69 21.85 0.23 -43.87 14 9 Si 1.01 37.43 29.56 68.60 2.03 39.46 14 10 H -0.26 -9.48 7.11 99.48 0.71 -8.77 14 11 H -0.27 -9.60 7.11 99.48 0.71 -8.89 14 12 H -0.26 -9.22 7.11 99.48 0.71 -8.51 14 13 N -0.56 -29.92 5.78 -177.68 -1.03 -30.94 14 14 H 0.42 22.40 6.27 -92.71 -0.58 21.82 14 15 C -0.06 -3.01 7.76 83.54 0.65 -2.36 14 16 Cl -0.06 -2.31 28.83 -2.72 -0.08 -2.39 14 17 H 0.06 2.13 8.14 -2.39 -0.02 2.11 14 18 H 0.06 2.04 7.88 -2.39 -0.02 2.02 14 19 H 0.07 2.22 8.14 -2.39 -0.02 2.20 14 20 H 0.12 5.77 8.06 -2.91 -0.02 5.75 14 21 H 0.30 13.47 8.30 -92.72 -0.77 12.70 14 Total: -1.00 -56.42 207.22 4.27 -52.15 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.67 Total: 25.36 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: 2.44 Total: -39.78 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -0.79 Total: -74.81 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.08 Total: -2.39 kcal Total: -56.42 4.27 -52.15 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261285334.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.330 kcal (2) G-P(sol) polarization free energy of solvation -56.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds