Wall clock time and date at job start Mon Mar 30 2020 02:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99917 * 2 1 4 4 H 1.48495 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47153 * 300.00105 * 3 2 1 6 6 H 1.48502 * 109.47052 * 59.99887 * 3 2 1 7 7 C 1.37878 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99923 * 186.28361 * 7 2 1 9 9 C 1.50704 * 119.99730 * 6.01452 * 7 2 1 10 10 C 1.52992 * 109.50449 * 56.45329 * 9 7 2 11 11 O 1.42905 * 109.47377 * 54.83658 * 10 9 7 12 12 C 1.53120 * 109.49966 * 296.37383 * 9 7 2 13 13 C 1.53124 * 109.16063 * 297.71483 * 12 9 7 14 14 C 1.53038 * 109.27909 * 302.34526 * 13 12 9 15 15 N 1.46853 * 109.51976 * 59.18160 * 14 13 12 16 16 C 1.46850 * 111.19536 * 298.25485 * 15 14 13 17 17 H 0.97000 * 119.99949 * 0.02562 * 1 2 3 18 18 H 1.08997 * 109.47052 * 174.83505 * 10 9 7 19 19 H 1.08997 * 109.47274 * 294.83412 * 10 9 7 20 20 H 0.96696 * 113.99706 * 180.02562 * 11 10 9 21 21 H 1.08998 * 109.52586 * 57.62205 * 12 9 7 22 22 H 1.09000 * 109.52257 * 177.74748 * 12 9 7 23 23 H 1.08998 * 109.50355 * 62.28841 * 13 12 9 24 24 H 1.09004 * 109.49939 * 182.36606 * 13 12 9 25 25 H 1.09001 * 109.46152 * 179.19585 * 14 13 12 26 26 H 1.08996 * 109.46251 * 299.17670 * 14 13 12 27 27 H 1.00894 * 110.99889 * 174.15978 * 15 14 13 28 28 H 1.08994 * 109.46535 * 301.72468 * 16 15 14 29 29 H 1.09006 * 109.45706 * 181.75743 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0796 -1.1968 0.1029 9 6 1.2572 -2.4956 -0.1356 10 6 0.4247 -2.4748 -1.4191 11 8 1.2722 -2.1823 -2.5319 12 6 0.3327 -2.6828 1.0705 13 6 1.1784 -2.7617 2.3446 14 6 2.1788 -3.9128 2.2165 15 7 3.0402 -3.6866 1.0489 16 6 2.2553 -3.6544 -0.1918 17 1 -0.4850 0.8400 -0.0004 18 1 -0.0429 -3.4485 -1.5646 19 1 -0.3472 -1.7094 -1.3391 20 1 0.8102 -2.1526 -3.3809 21 1 -0.3518 -1.8373 1.1395 22 1 -0.2374 -3.6043 0.9529 23 1 1.7177 -1.8245 2.4820 24 1 0.5288 -2.9370 3.2022 25 1 2.7921 -3.9627 3.1162 26 1 1.6385 -4.8513 2.0927 27 1 3.7694 -4.3820 0.9975 28 1 1.7148 -4.5942 -0.3041 29 1 2.9243 -3.5165 -1.0413 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261322217.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:41 Heat of formation + Delta-G solvation = -74.806992 kcal Electronic energy + Delta-G solvation = -12301.845655 eV Core-core repulsion = 10223.645430 eV Total energy + Delta-G solvation = -2078.200224 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.83138 -36.97275 -34.74728 -32.32276 -31.79807 -26.90387 -26.19352 -24.33574 -22.10345 -20.34694 -17.80663 -17.52585 -17.16026 -16.55058 -15.45635 -15.11194 -14.68470 -14.32728 -13.90805 -13.79017 -13.27140 -13.08767 -12.77682 -12.45285 -12.38894 -11.76474 -11.42349 -11.11924 -10.98708 -10.54179 -10.40990 -10.11659 -9.05984 -7.87501 -5.91301 1.41837 1.45539 1.56003 2.55455 3.35967 3.59291 3.92849 4.34778 4.37034 4.56179 4.59132 4.74811 4.83870 4.88735 4.99163 5.09345 5.23902 5.33426 5.62797 5.67159 5.75893 5.96839 6.19903 6.40781 6.64299 6.85395 7.03909 7.32129 7.69378 9.12776 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.036439 B = 0.019503 C = 0.016422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.225607 B = 1435.368608 C = 1704.622508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.016 3.984 3 Si 0.935 3.065 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.450 4.450 8 H 0.039 0.961 9 C 0.061 3.939 10 C 0.091 3.909 11 O -0.577 6.577 12 C -0.104 4.104 13 C -0.101 4.101 14 C 0.070 3.930 15 N -0.690 5.690 16 C 0.088 3.912 17 H 0.252 0.748 18 H 0.013 0.987 19 H 0.051 0.949 20 H 0.370 0.630 21 H 0.066 0.934 22 H 0.025 0.975 23 H 0.046 0.954 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.027 0.973 27 H 0.340 0.660 28 H 0.010 0.990 29 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 -6.583 0.978 6.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.180 4.180 3 Si 0.764 3.236 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.489 4.489 8 H 0.058 0.942 9 C 0.060 3.940 10 C 0.013 3.987 11 O -0.381 6.381 12 C -0.142 4.142 13 C -0.138 4.138 14 C -0.059 4.059 15 N -0.321 5.321 16 C -0.042 4.042 17 H 0.061 0.939 18 H 0.031 0.969 19 H 0.069 0.931 20 H 0.215 0.785 21 H 0.084 0.916 22 H 0.043 0.957 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.100 0.900 26 H 0.045 0.955 27 H 0.158 0.842 28 H 0.028 0.972 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.246 -5.756 1.543 6.088 hybrid contribution -0.394 0.183 -0.703 0.826 sum 0.852 -5.573 0.840 5.700 Atomic orbital electron populations 1.69891 1.06227 1.25746 1.54139 1.25360 0.95464 1.00830 0.96309 0.85860 0.79138 0.81775 0.76851 1.20400 1.21486 1.21365 1.20949 0.92535 0.90508 1.44909 0.94221 1.18316 0.92049 0.93385 0.90254 1.22207 0.93466 0.95822 0.87196 1.86542 1.39172 1.94688 1.17683 1.21459 0.98236 0.98843 0.95668 1.21362 0.97019 0.98555 0.96899 1.21852 0.94735 0.95921 0.93429 1.60034 1.14929 1.54306 1.02818 1.21761 0.95522 0.95683 0.91191 0.93854 0.96879 0.93119 0.78467 0.91558 0.95667 0.93511 0.92047 0.90013 0.95505 0.84194 0.97220 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.50 9.44 21.45 0.20 -51.29 15 2 C 0.02 0.90 5.13 84.65 0.43 1.33 15 3 Si 0.93 45.75 29.54 68.60 2.03 47.78 15 4 H -0.28 -13.71 7.11 99.48 0.71 -13.01 15 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 15 6 H -0.29 -13.80 7.11 99.48 0.71 -13.09 15 7 C -0.45 -24.83 6.06 25.60 0.16 -24.68 15 8 H 0.04 2.32 7.65 -2.91 -0.02 2.30 15 9 C 0.06 2.95 0.34 -52.88 -0.02 2.93 15 10 C 0.09 4.31 5.59 71.98 0.40 4.71 15 11 O -0.58 -26.19 12.70 -148.98 -1.89 -28.08 15 12 C -0.10 -4.81 4.63 30.68 0.14 -4.66 15 13 C -0.10 -4.14 5.84 30.65 0.18 -3.96 15 14 C 0.07 2.44 6.55 86.32 0.57 3.00 15 15 N -0.69 -26.61 6.37 -513.99 -3.28 -29.89 15 16 C 0.09 3.76 5.11 86.32 0.44 4.20 15 17 H 0.25 13.75 8.31 -92.71 -0.77 12.98 15 18 H 0.01 0.56 8.14 -2.39 -0.02 0.54 15 19 H 0.05 2.65 6.20 -2.39 -0.01 2.63 15 20 H 0.37 12.76 9.12 -74.06 -0.68 12.09 15 21 H 0.07 3.47 6.09 -2.39 -0.01 3.45 15 22 H 0.02 1.06 8.14 -2.39 -0.02 1.04 15 23 H 0.05 2.21 7.35 -2.39 -0.02 2.19 15 24 H 0.06 2.20 8.14 -2.39 -0.02 2.18 15 25 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 26 H 0.03 0.87 8.14 -2.39 -0.02 0.85 15 27 H 0.34 10.82 8.90 -89.70 -0.80 10.02 15 28 H 0.01 0.39 8.14 -2.39 -0.02 0.37 15 29 H 0.05 2.34 7.86 -2.38 -0.02 2.32 15 Total: -1.00 -61.65 228.96 -0.97 -62.61 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -0.33 Total: 15.99 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: 2.30 Total: -17.12 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -3.07 Total: -81.18 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -1.89 Total: -28.08 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -61.65 -0.97 -62.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261322217.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.192 kcal (2) G-P(sol) polarization free energy of solvation -61.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds