Wall clock time and date at job start Mon Mar 30 2020 02:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48497 * 109.47147 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47140 * 300.00397 * 3 2 1 6 6 H 1.48506 * 109.46879 * 60.00481 * 3 2 1 7 7 C 1.37873 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00259 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46923 * 300.00145 * 9 7 2 11 11 C 1.52999 * 109.47130 * 59.99876 * 9 7 2 12 12 O 1.42903 * 109.47256 * 185.00526 * 11 9 7 13 13 C 1.52999 * 109.47366 * 180.02562 * 9 7 2 14 14 H 1.09006 * 110.62669 * 301.64563 * 13 9 7 15 15 C 1.55137 * 110.70949 * 64.94284 * 13 9 7 16 16 C 1.54903 * 101.65633 * 154.03877 * 15 13 9 17 17 N 1.47848 * 104.79551 * 322.93204 * 16 15 13 18 18 C 1.47449 * 108.56746 * 24.09321 * 17 16 15 19 19 H 0.96999 * 120.00393 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47286 * 65.00087 * 11 9 7 21 21 H 1.09008 * 109.47201 * 304.99867 * 11 9 7 22 22 H 0.96700 * 114.00311 * 180.02562 * 12 11 9 23 23 H 1.08995 * 110.99006 * 272.13037 * 15 13 9 24 24 H 1.09003 * 110.98823 * 35.94543 * 15 13 9 25 25 H 1.08998 * 110.37537 * 204.10960 * 16 15 13 26 26 H 1.08996 * 110.46917 * 81.80785 * 16 15 13 27 27 H 1.00905 * 111.00028 * 261.83110 * 17 16 15 28 28 H 1.09002 * 109.88891 * 239.60641 * 18 17 16 29 29 H 1.08993 * 109.88551 * 118.41789 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5570 0.8897 11 6 0.3709 -2.5799 -1.2494 12 8 -0.4300 -3.7620 -1.1921 13 6 2.2453 -3.6620 -0.0005 14 1 2.9017 -3.6061 -0.8690 15 6 3.0689 -3.6796 1.3140 16 6 3.4516 -5.1767 1.4235 17 7 2.2650 -5.9069 0.9289 18 6 1.5030 -5.0145 0.0361 19 1 -0.4851 0.8400 0.0004 20 1 1.0022 -2.6114 -2.1374 21 1 -0.2766 -1.7042 -1.2949 22 1 -1.0141 -3.8787 -1.9539 23 1 3.9577 -3.0549 1.2263 24 1 2.4578 -3.3698 2.1618 25 1 3.6548 -5.4415 2.4611 26 1 4.3186 -5.3950 0.8001 27 1 1.6919 -6.2268 1.6953 28 1 0.4946 -4.8736 0.4251 29 1 1.4600 -5.4412 -0.9659 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261328241.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:46 Heat of formation + Delta-G solvation = -62.521565 kcal Electronic energy + Delta-G solvation = -11870.253121 eV Core-core repulsion = 9792.585632 eV Total energy + Delta-G solvation = -2077.667488 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.16011 -35.63850 -33.33123 -30.82529 -28.49975 -26.67422 -24.51119 -21.23020 -20.59494 -18.81911 -16.88654 -15.84198 -15.55943 -14.63206 -14.43168 -13.38403 -12.93766 -12.73656 -12.29707 -12.09604 -11.57212 -11.07896 -10.98513 -10.81246 -10.49254 -10.39269 -9.95662 -9.52310 -9.23586 -9.13784 -8.76757 -8.28031 -7.85843 -6.07934 -4.15674 3.24002 3.32580 3.36544 4.35887 4.89384 5.16859 5.47216 5.61610 5.73605 5.82009 6.12610 6.16954 6.46011 6.62334 6.64379 6.76189 6.87915 6.95999 7.08655 7.25533 7.48676 7.58918 7.82532 7.93606 7.98102 8.32138 8.75703 8.90289 9.49844 10.96954 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.045514 B = 0.013877 C = 0.011174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.042773 B = 2017.282716 C = 2505.106065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.510 4.510 8 H 0.060 0.940 9 C 0.064 3.936 10 H 0.031 0.969 11 C 0.071 3.929 12 O -0.586 6.586 13 C -0.090 4.090 14 H 0.059 0.941 15 C -0.136 4.136 16 C 0.043 3.957 17 N -0.696 5.696 18 C 0.060 3.940 19 H 0.261 0.739 20 H 0.012 0.988 21 H 0.078 0.922 22 H 0.351 0.649 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.328 0.672 28 H 0.065 0.935 29 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 -5.420 0.101 5.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.078 0.922 9 C 0.045 3.955 10 H 0.049 0.951 11 C -0.006 4.006 12 O -0.390 6.390 13 C -0.110 4.110 14 H 0.077 0.923 15 C -0.174 4.174 16 C -0.086 4.086 17 N -0.324 5.324 18 C -0.068 4.068 19 H 0.071 0.929 20 H 0.031 0.969 21 H 0.096 0.904 22 H 0.195 0.805 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.142 0.858 28 H 0.083 0.917 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.820 -5.721 0.147 6.380 hybrid contribution -0.242 1.792 0.008 1.808 sum 2.578 -3.929 0.155 4.702 Atomic orbital electron populations 1.69892 1.05917 1.26527 1.50524 1.25054 0.94910 0.99344 0.94932 0.86516 0.80178 0.83606 0.77636 1.19692 1.20984 1.20950 1.21174 0.93091 0.90031 1.50519 0.92152 1.18669 0.91545 0.91518 0.93730 0.95085 1.22714 0.93359 0.86131 0.98379 1.86530 1.58241 1.46917 1.47266 1.22383 0.97227 0.95250 0.96132 0.92278 1.23017 1.00246 0.95253 0.98930 1.22879 0.94391 0.93109 0.98270 1.61871 1.09626 1.39465 1.21434 1.22710 0.96532 0.91050 0.96535 0.92899 0.96924 0.90425 0.80515 0.91491 0.91753 0.92707 0.91513 0.85817 0.91658 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.11 11.29 55.43 0.63 -24.49 15 2 C 0.06 1.60 5.29 -17.82 -0.09 1.51 15 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 15 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 7 C -0.51 -13.73 8.10 -34.44 -0.28 -14.01 15 8 H 0.06 1.61 7.63 -52.49 -0.40 1.21 15 9 C 0.06 1.61 1.55 -91.77 -0.14 1.47 15 10 H 0.03 0.87 8.13 -51.93 -0.42 0.45 15 11 C 0.07 1.70 6.24 37.16 0.23 1.94 15 12 O -0.59 -12.31 10.54 -35.23 -0.37 -12.68 15 13 C -0.09 -1.96 2.44 -88.80 -0.22 -2.18 15 14 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 15 C -0.14 -2.65 5.96 -24.60 -0.15 -2.79 15 16 C 0.04 0.72 7.57 -2.30 -0.02 0.70 15 17 N -0.70 -12.23 7.39 -110.79 -0.82 -13.05 15 18 C 0.06 1.19 5.59 -2.83 -0.02 1.18 15 19 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 20 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 15 21 H 0.08 2.06 5.95 -51.92 -0.31 1.75 15 22 H 0.35 5.72 9.12 45.56 0.42 6.13 15 23 H 0.07 1.29 8.12 -51.93 -0.42 0.87 15 24 H 0.06 1.31 8.04 -51.93 -0.42 0.89 15 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 27 H 0.33 5.18 8.91 -39.29 -0.35 4.83 15 28 H 0.07 1.38 6.53 -51.93 -0.34 1.05 15 29 H 0.06 1.25 8.03 -51.93 -0.42 0.83 15 LS Contribution 234.15 15.07 3.53 3.53 Total: -1.00 -28.60 234.15 -6.22 -34.82 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.49 Total: 8.14 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -0.68 Total: -12.18 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.19 Total: -37.54 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.37 Total: -12.68 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.60 -6.22 -34.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261328241.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.697 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds