Wall clock time and date at job start Mon Mar 30 2020 02:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48497 * 109.47147 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47140 * 300.00397 * 3 2 1 6 6 H 1.48506 * 109.46879 * 60.00481 * 3 2 1 7 7 C 1.37873 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00259 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46923 * 300.00145 * 9 7 2 11 11 C 1.52999 * 109.47130 * 59.99876 * 9 7 2 12 12 O 1.42903 * 109.47256 * 185.00526 * 11 9 7 13 13 C 1.52999 * 109.47366 * 180.02562 * 9 7 2 14 14 H 1.09006 * 110.62669 * 301.64563 * 13 9 7 15 15 C 1.55137 * 110.70949 * 64.94284 * 13 9 7 16 16 C 1.54903 * 101.65633 * 154.03877 * 15 13 9 17 17 N 1.47848 * 104.79551 * 322.93204 * 16 15 13 18 18 C 1.47449 * 108.56746 * 24.09321 * 17 16 15 19 19 H 0.96999 * 120.00393 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47286 * 65.00087 * 11 9 7 21 21 H 1.09008 * 109.47201 * 304.99867 * 11 9 7 22 22 H 0.96700 * 114.00311 * 180.02562 * 12 11 9 23 23 H 1.08995 * 110.99006 * 272.13037 * 15 13 9 24 24 H 1.09003 * 110.98823 * 35.94543 * 15 13 9 25 25 H 1.08998 * 110.37537 * 204.10960 * 16 15 13 26 26 H 1.08996 * 110.46917 * 81.80785 * 16 15 13 27 27 H 1.00905 * 111.00028 * 261.83110 * 17 16 15 28 28 H 1.09002 * 109.88891 * 239.60641 * 18 17 16 29 29 H 1.08993 * 109.88551 * 118.41789 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5570 0.8897 11 6 0.3709 -2.5799 -1.2494 12 8 -0.4300 -3.7620 -1.1921 13 6 2.2453 -3.6620 -0.0005 14 1 2.9017 -3.6061 -0.8690 15 6 3.0689 -3.6796 1.3140 16 6 3.4516 -5.1767 1.4235 17 7 2.2650 -5.9069 0.9289 18 6 1.5030 -5.0145 0.0361 19 1 -0.4851 0.8400 0.0004 20 1 1.0022 -2.6114 -2.1374 21 1 -0.2766 -1.7042 -1.2949 22 1 -1.0141 -3.8787 -1.9539 23 1 3.9577 -3.0549 1.2263 24 1 2.4578 -3.3698 2.1618 25 1 3.6548 -5.4415 2.4611 26 1 4.3186 -5.3950 0.8001 27 1 1.6919 -6.2268 1.6953 28 1 0.4946 -4.8736 0.4251 29 1 1.4600 -5.4412 -0.9659 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261328241.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:46 Heat of formation + Delta-G solvation = -84.702038 kcal Electronic energy + Delta-G solvation = -11871.214938 eV Core-core repulsion = 9792.585632 eV Total energy + Delta-G solvation = -2078.629306 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.80387 -37.36738 -35.28415 -32.68374 -30.03911 -28.44139 -26.51644 -23.03376 -22.10596 -20.59971 -18.80812 -17.73521 -17.14924 -16.40640 -16.18715 -15.15824 -14.68930 -14.32276 -14.21059 -13.68424 -13.40216 -12.85687 -12.72205 -12.57202 -12.15857 -12.06374 -11.77000 -11.34482 -11.06008 -11.04705 -10.71920 -10.26556 -9.33341 -8.14555 -6.30046 1.38991 1.41535 1.52816 2.39700 3.08918 3.45766 3.92621 3.98729 4.09054 4.31804 4.55008 4.69595 4.76579 4.88104 5.00225 5.08647 5.12085 5.20505 5.36485 5.52596 5.53848 5.86921 5.91112 6.00677 6.28915 6.59269 6.81616 7.16835 7.39124 8.89483 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.045514 B = 0.013877 C = 0.011174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.042773 B = 2017.282716 C = 2505.106065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.064 3.936 10 H -0.008 1.008 11 C 0.084 3.916 12 O -0.586 6.586 13 C -0.092 4.092 14 H 0.053 0.947 15 C -0.135 4.135 16 C 0.051 3.949 17 N -0.693 5.693 18 C 0.074 3.926 19 H 0.262 0.738 20 H 0.016 0.984 21 H 0.050 0.950 22 H 0.374 0.626 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.340 0.660 28 H 0.049 0.951 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.369 -5.927 0.164 6.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.188 4.188 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.563 4.563 8 H 0.077 0.923 9 C 0.045 3.955 10 H 0.010 0.990 11 C 0.006 3.994 12 O -0.392 6.392 13 C -0.112 4.112 14 H 0.072 0.928 15 C -0.173 4.173 16 C -0.078 4.078 17 N -0.321 5.321 18 C -0.055 4.055 19 H 0.072 0.928 20 H 0.035 0.965 21 H 0.068 0.932 22 H 0.221 0.779 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.155 0.845 28 H 0.067 0.933 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.888 -6.250 0.205 7.364 hybrid contribution -0.627 1.907 -0.014 2.008 sum 3.261 -4.343 0.191 5.434 Atomic orbital electron populations 1.70024 1.07276 1.27332 1.51158 1.25828 0.95697 1.02679 0.94576 0.85511 0.79146 0.79437 0.77636 1.18955 1.20465 1.20729 1.21446 0.93186 0.91154 1.50522 0.92278 1.18577 0.91899 0.92567 0.92441 0.98966 1.22339 0.93016 0.86049 0.97952 1.86479 1.58523 1.45305 1.48895 1.22301 0.96795 0.94932 0.97153 0.92806 1.22982 0.99603 0.97679 0.97080 1.22899 0.94096 0.90468 1.00324 1.61846 1.09799 1.38542 1.21908 1.22454 0.95698 0.90397 0.96972 0.92843 0.96527 0.93174 0.77851 0.91441 0.93213 0.89793 0.90480 0.84483 0.93290 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.59 11.29 21.45 0.24 -52.35 15 2 C 0.01 0.59 5.29 84.65 0.45 1.04 15 3 Si 0.96 42.86 29.54 68.60 2.03 44.88 15 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 15 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 7 C -0.53 -28.48 8.10 25.60 0.21 -28.27 15 8 H 0.06 3.14 7.63 -2.91 -0.02 3.12 15 9 C 0.06 3.26 1.55 -11.54 -0.02 3.24 15 10 H -0.01 -0.45 8.13 -2.39 -0.02 -0.47 15 11 C 0.08 4.06 6.24 71.98 0.45 4.51 15 12 O -0.59 -24.34 10.54 -148.98 -1.57 -25.91 15 13 C -0.09 -3.96 2.44 -9.61 -0.02 -3.98 15 14 H 0.05 2.35 8.14 -2.38 -0.02 2.33 15 15 C -0.13 -5.10 5.96 31.98 0.19 -4.91 15 16 C 0.05 1.56 7.57 86.77 0.66 2.22 15 17 N -0.69 -22.66 7.39 -504.43 -3.73 -26.39 15 18 C 0.07 2.85 5.59 86.65 0.48 3.33 15 19 H 0.26 14.24 8.31 -92.71 -0.77 13.47 15 20 H 0.02 0.78 8.14 -2.39 -0.02 0.76 15 21 H 0.05 2.71 5.95 -2.38 -0.01 2.70 15 22 H 0.37 11.73 9.12 -74.06 -0.68 11.06 15 23 H 0.07 2.52 8.12 -2.39 -0.02 2.50 15 24 H 0.05 2.01 8.04 -2.39 -0.02 1.99 15 25 H 0.08 2.11 8.14 -2.39 -0.02 2.09 15 26 H 0.08 2.24 8.14 -2.39 -0.02 2.22 15 27 H 0.34 9.89 8.91 -89.69 -0.80 9.09 15 28 H 0.05 2.05 6.53 -2.39 -0.02 2.04 15 29 H 0.06 2.35 8.03 -2.39 -0.02 2.33 15 Total: -1.00 -60.39 234.15 -0.97 -61.36 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -0.33 Total: 21.22 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 2.39 Total: -22.82 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -3.49 Total: -78.74 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -1.57 Total: -25.91 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -60.39 -0.97 -61.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261328241.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.342 kcal (2) G-P(sol) polarization free energy of solvation -60.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds