Wall clock time and date at job start Mon Mar 30 2020 01:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86798 * 119.99669 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00154 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99904 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99615 * 3 2 1 7 7 C 1.40045 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00438 * 0.02562 * 7 2 1 10 10 O 1.21683 * 119.99846 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00143 * 179.97438 * 9 7 2 12 12 C 1.46499 * 120.00195 * 179.97438 * 11 9 7 13 13 H 1.09006 * 115.54829 * 350.67514 * 12 11 9 14 14 C 1.52993 * 117.49851 * 136.37913 * 12 11 9 15 15 C 1.52995 * 60.00055 * 107.49648 * 14 12 11 16 16 H 1.09008 * 117.51447 * 252.52158 * 15 14 12 17 17 C 1.52998 * 117.50193 * 107.49087 * 15 14 12 18 18 O 1.42901 * 109.47075 * 116.37934 * 17 15 14 19 19 H 0.96996 * 120.00331 * 0.02562 * 1 2 3 20 20 H 0.97000 * 119.99736 * 0.02562 * 11 9 7 21 21 H 1.09005 * 117.50141 * 214.97922 * 14 12 11 22 22 H 1.09000 * 117.49997 * 0.02562 * 14 12 11 23 23 H 1.08994 * 109.47175 * 236.37609 * 17 15 14 24 24 H 1.08999 * 109.47035 * 356.37684 * 17 15 14 25 25 H 0.96699 * 113.99740 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0465 1.4000 5 1 3.5382 1.4401 -0.7001 6 1 1.4381 2.6526 -0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2166 -4.9165 0.0011 13 1 0.1411 -4.8384 0.1609 14 6 1.7139 -6.0196 -0.9351 15 6 1.9287 -6.1431 0.5747 16 1 2.9421 -6.0060 0.9520 17 6 1.0768 -7.1665 1.3281 18 8 1.9239 -8.1729 1.8863 19 1 -0.4850 0.8400 -0.0004 20 1 2.9190 -3.6476 0.0009 21 1 0.9656 -6.6676 -1.3916 22 1 2.5863 -5.8016 -1.5511 23 1 0.5311 -6.6664 2.1282 24 1 0.3694 -7.6281 0.6392 25 1 1.4502 -8.8569 2.3790 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306199362.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:43 Heat of formation + Delta-G solvation = -100.180618 kcal Electronic energy + Delta-G solvation = -10879.436044 eV Core-core repulsion = 8664.302442 eV Total energy + Delta-G solvation = -2215.133602 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.96718 -38.40481 -36.79839 -34.67330 -33.17024 -28.60835 -27.44736 -23.43016 -21.71797 -21.52231 -19.22322 -18.31520 -17.55694 -16.79644 -16.01158 -15.67836 -15.21194 -14.72886 -14.54334 -13.80868 -13.40700 -12.98546 -12.82696 -12.65923 -12.13583 -12.02454 -11.96769 -11.56356 -10.93873 -10.67110 -9.91536 -9.26290 -8.31824 -6.88876 1.40531 1.41860 1.57632 2.23309 2.37918 2.75471 2.95378 3.46520 3.62531 3.87300 4.13475 4.28562 4.34440 4.51601 4.73072 4.83369 5.01988 5.23574 5.29969 5.84718 6.17347 6.26529 6.83891 6.91647 7.48527 8.44785 8.64070 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.088673 B = 0.008064 C = 0.007893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.691266 B = 3471.294630 C = 3546.428147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.249 1.249 6 H -0.272 1.272 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.538 3.462 10 O -0.630 6.630 11 N -0.727 5.727 12 C 0.081 3.919 13 H 0.101 0.899 14 C -0.176 4.176 15 C -0.160 4.160 16 H 0.105 0.895 17 C 0.112 3.888 18 O -0.588 6.588 19 H 0.276 0.724 20 H 0.396 0.604 21 H 0.114 0.886 22 H 0.100 0.900 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.778 -9.294 1.221 10.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.172 1.172 6 H -0.197 1.197 7 C -0.610 4.610 8 H 0.106 0.894 9 C 0.343 3.657 10 O -0.517 6.517 11 N -0.378 5.378 12 C -0.026 4.026 13 H 0.119 0.881 14 C -0.215 4.215 15 C -0.180 4.180 16 H 0.123 0.877 17 C 0.035 3.965 18 O -0.397 6.397 19 H 0.086 0.914 20 H 0.230 0.770 21 H 0.132 0.868 22 H 0.118 0.882 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 4.184 -8.836 0.940 9.821 hybrid contribution 0.072 0.323 0.272 0.428 sum 4.256 -8.513 1.212 9.594 Atomic orbital electron populations 1.70180 1.09559 1.29108 1.36134 1.26999 0.95565 1.05005 0.91106 0.84970 0.78715 0.74845 0.79450 1.18578 1.17243 1.19654 1.21432 0.94808 0.89966 1.54784 0.89363 1.18647 0.86933 0.84133 0.75960 1.90536 1.16095 1.87791 1.57306 1.45304 1.08852 1.03812 1.79863 1.21344 0.96215 0.80816 1.04244 0.88065 1.23678 1.04034 1.01545 0.92222 1.22676 1.01256 0.97897 0.96144 0.87673 1.21601 0.90896 0.87937 0.96115 1.86410 1.38708 1.40351 1.74188 0.91422 0.77037 0.86765 0.88151 0.93293 0.91549 0.75068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.46 11.83 21.83 0.26 -50.20 15 2 C 0.03 1.60 5.50 85.30 0.47 2.07 15 3 Si 1.00 40.98 29.56 68.60 2.03 43.00 15 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 15 5 H -0.25 -9.48 7.11 99.48 0.71 -8.77 15 6 H -0.27 -10.70 7.11 99.48 0.71 -9.99 15 7 C -0.57 -32.90 9.54 24.83 0.24 -32.66 15 8 H 0.09 4.53 7.85 -2.91 -0.02 4.51 15 9 C 0.54 31.88 7.75 86.36 0.67 32.55 15 10 O -0.63 -42.75 14.59 -4.29 -0.06 -42.82 15 11 N -0.73 -33.87 5.56 -446.84 -2.49 -36.35 15 12 C 0.08 3.24 6.15 44.99 0.28 3.52 15 13 H 0.10 4.55 7.40 -2.38 -0.02 4.54 15 14 C -0.18 -5.33 10.10 30.59 0.31 -5.03 15 15 C -0.16 -4.95 5.98 -10.80 -0.06 -5.02 15 16 H 0.11 3.32 8.14 -2.38 -0.02 3.30 15 17 C 0.11 2.86 7.33 71.98 0.53 3.39 15 18 O -0.59 -13.83 13.66 -148.98 -2.04 -15.87 15 19 H 0.28 15.29 8.29 -92.71 -0.77 14.52 15 20 H 0.40 16.05 8.81 -92.71 -0.82 15.23 15 21 H 0.11 2.97 8.03 -2.38 -0.02 2.95 15 22 H 0.10 2.90 8.14 -2.39 -0.02 2.88 15 23 H 0.05 1.27 8.14 -2.39 -0.02 1.25 15 24 H 0.07 1.44 7.87 -2.39 -0.02 1.42 15 25 H 0.40 5.07 9.12 -74.06 -0.68 4.40 15 Total: -1.00 -76.51 230.66 -0.15 -76.66 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -0.28 Total: 26.75 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 2.42 Total: -1.17 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -2.23 Total: -86.56 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -2.10 Total: -58.68 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Total: -76.51 -0.15 -76.66 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306199362.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.521 kcal (2) G-P(sol) polarization free energy of solvation -76.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds