Wall clock time and date at job start Mon Mar 30 2020 01:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46878 * 179.97438 * 9 7 2 11 11 C 1.46757 * 124.35101 * 269.72717 * 10 9 7 12 12 C 1.54300 * 105.56500 * 196.88551 * 11 10 9 13 13 H 1.09000 * 110.78118 * 93.01489 * 12 11 10 14 14 O 1.42904 * 111.12063 * 216.71012 * 12 11 10 15 15 C 1.54632 * 101.84306 * 334.93636 * 12 11 10 16 16 C 1.34423 * 124.34376 * 90.02660 * 10 9 7 17 17 O 1.21272 * 124.94706 * 359.57264 * 16 10 9 18 18 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 19 19 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 20 20 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 21 21 H 1.08997 * 110.24727 * 316.01783 * 11 10 9 22 22 H 1.08999 * 110.24582 * 78.01831 * 11 10 9 23 23 H 0.96701 * 114.00085 * 174.01210 * 14 12 11 24 24 H 1.08998 * 110.48523 * 265.90007 * 15 12 11 25 25 H 1.09001 * 110.59718 * 143.31695 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7368 -4.2459 -1.2111 12 6 3.3252 -5.5951 -0.7483 13 1 2.5879 -6.3921 -0.8449 14 8 4.5157 -5.9131 -1.4720 15 6 3.6409 -5.3104 0.7385 16 6 2.6955 -4.1895 1.1104 17 8 2.4221 -3.8590 2.2448 18 1 -0.4850 0.8401 0.0004 19 1 0.6241 -2.5567 0.8902 20 1 0.6248 -2.5571 -0.8897 21 1 1.9380 -4.4096 -1.9343 22 1 3.5200 -3.6257 -1.6470 23 1 4.9702 -6.7049 -1.1533 24 1 4.6764 -4.9904 0.8541 25 1 3.4449 -6.1927 1.3478 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306463497.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:50 Heat of formation + Delta-G solvation = -85.633558 kcal Electronic energy + Delta-G solvation = -11290.003386 eV Core-core repulsion = 9075.500592 eV Total energy + Delta-G solvation = -2214.502794 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.73786 -36.85031 -34.97042 -32.99355 -30.71821 -27.19167 -26.58449 -22.95831 -21.35358 -18.81388 -17.50412 -16.59011 -15.86631 -15.32371 -14.56024 -14.40645 -13.80343 -13.19210 -12.95127 -12.60172 -12.07305 -11.67966 -11.37395 -10.92424 -10.83395 -10.59889 -10.30250 -10.13171 -9.65619 -8.97507 -8.48116 -7.73258 -6.09081 -4.14481 3.28882 3.32303 3.36792 3.42212 3.81267 4.24360 4.43391 4.68351 4.81683 5.09348 5.25079 5.54949 5.75867 5.85580 6.00672 6.19548 6.93587 7.29534 7.49775 7.57260 7.87556 8.15759 8.17866 8.83604 9.03856 9.51635 10.98958 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.055466 B = 0.010954 C = 0.010427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.696854 B = 2555.444063 C = 2684.742642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.254 3.746 10 N -0.597 5.597 11 C 0.112 3.888 12 C 0.092 3.908 13 H 0.077 0.923 14 O -0.557 6.557 15 C -0.192 4.192 16 C 0.510 3.490 17 O -0.539 6.539 18 H 0.264 0.736 19 H 0.044 0.956 20 H 0.036 0.964 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.380 0.620 24 H 0.105 0.895 25 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -10.648 -3.324 12.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.570 4.570 8 H 0.078 0.922 9 C 0.136 3.864 10 N -0.330 5.330 11 C -0.012 4.012 12 C 0.032 3.968 13 H 0.095 0.905 14 O -0.362 6.362 15 C -0.232 4.232 16 C 0.296 3.704 17 O -0.417 6.417 18 H 0.074 0.926 19 H 0.062 0.938 20 H 0.054 0.946 21 H 0.098 0.902 22 H 0.096 0.904 23 H 0.227 0.773 24 H 0.123 0.877 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.494 -9.732 -3.083 11.593 hybrid contribution 0.602 0.475 0.257 0.809 sum 6.096 -9.257 -2.826 11.438 Atomic orbital electron populations 1.69939 1.06027 1.27102 1.50311 1.24957 0.94931 0.99374 0.94876 0.86387 0.80027 0.83068 0.77647 1.19725 1.20843 1.20788 1.21501 0.93604 0.90585 1.51329 0.92187 1.19278 0.86869 0.81695 0.98574 1.48663 1.45020 1.34460 1.04847 1.21751 0.98933 0.91627 0.88923 1.22652 0.87132 0.97391 0.89627 0.90506 1.86506 1.39732 1.50158 1.59791 1.23138 1.02075 1.00131 0.97886 1.20402 0.81341 0.83486 0.85192 1.90671 1.62382 1.67462 1.21235 0.92638 0.93821 0.94566 0.90175 0.90401 0.77271 0.87661 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 15 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 15 3 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 15 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 7 C -0.53 -15.36 9.39 -34.44 -0.32 -15.69 15 8 H 0.06 1.75 7.81 -52.48 -0.41 1.34 15 9 C 0.25 6.74 5.68 -5.19 -0.03 6.72 15 10 N -0.60 -13.14 2.92 -173.91 -0.51 -13.65 15 11 C 0.11 1.91 7.11 -3.22 -0.02 1.88 15 12 C 0.09 1.20 4.52 -25.19 -0.11 1.09 15 13 H 0.08 0.85 8.14 -51.93 -0.42 0.42 15 14 O -0.56 -6.50 13.41 -35.23 -0.47 -6.98 15 15 C -0.19 -2.82 6.62 -26.74 -0.18 -3.00 15 16 C 0.51 11.04 8.02 -10.86 -0.09 10.95 15 17 O -0.54 -14.07 17.60 5.56 0.10 -13.97 15 18 H 0.26 7.37 8.31 -40.82 -0.34 7.04 15 19 H 0.04 1.28 7.93 -51.93 -0.41 0.87 15 20 H 0.04 0.96 8.14 -51.93 -0.42 0.53 15 21 H 0.08 1.24 8.14 -51.93 -0.42 0.82 15 22 H 0.08 1.39 8.09 -51.93 -0.42 0.97 15 23 H 0.38 2.50 9.11 45.56 0.42 2.92 15 24 H 0.11 1.47 8.10 -51.93 -0.42 1.05 15 25 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 LS Contribution 226.79 15.07 3.42 3.42 Total: -1.00 -34.08 226.79 -4.67 -38.75 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: -2.07 Total: -2.29 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -0.85 Total: 3.61 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.23 Total: -39.57 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.37 Total: -20.95 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -34.08 -4.67 -38.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306463497.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.881 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds