Wall clock time and date at job start Mon Mar 30 2020 02:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00108 * 2 1 4 4 H 1.48502 * 109.47257 * 240.00071 * 3 2 1 5 5 H 1.48495 * 109.47442 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46818 * 120.00559 * 3 2 1 7 7 C 1.38809 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00350 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00198 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00473 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47553 * 204.99780 * 10 9 7 12 12 C 1.52997 * 109.47201 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46862 * 60.00295 * 12 11 10 14 14 O 1.42903 * 109.47256 * 60.00148 * 13 12 11 15 15 C 1.53001 * 109.47329 * 299.99879 * 13 12 11 16 16 C 1.52997 * 109.47050 * 60.00237 * 15 13 12 17 17 H 0.97001 * 119.99697 * 359.97438 * 1 2 3 18 18 H 0.96996 * 120.00213 * 0.02562 * 9 7 2 19 19 H 1.09006 * 109.47173 * 325.00469 * 10 9 7 20 20 H 1.09009 * 109.46785 * 59.99979 * 11 10 9 21 21 H 1.08997 * 109.47329 * 300.00324 * 11 10 9 22 22 H 1.08997 * 109.47549 * 300.00564 * 12 11 10 23 23 H 1.08997 * 109.46932 * 180.02562 * 12 11 10 24 24 H 1.09008 * 109.47201 * 179.97438 * 13 12 11 25 25 H 0.96700 * 114.00311 * 180.02562 * 14 13 12 26 26 H 1.08999 * 109.47164 * 180.02562 * 15 13 12 27 27 H 1.08997 * 109.47124 * 299.99757 * 15 13 12 28 28 H 1.08997 * 109.46932 * 180.02562 * 16 15 13 29 29 H 1.08997 * 109.47549 * 59.99780 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.1807 -4.7522 -0.6101 12 6 1.9459 -6.0771 -0.6106 13 6 2.3102 -6.4561 0.8262 14 8 1.1165 -6.5958 1.5993 15 6 3.1874 -5.3608 1.4358 16 6 2.4222 -4.0359 1.4364 17 1 -0.4850 0.8401 0.0004 18 1 0.3555 -2.3881 -0.0005 19 1 2.9687 -3.5506 -0.5899 20 1 0.9215 -4.4823 -1.6339 21 1 0.2700 -4.8584 -0.0207 22 1 2.8564 -5.9706 -1.2002 23 1 1.3211 -6.8573 -1.0453 24 1 2.8550 -7.4003 0.8259 25 1 1.2720 -6.8355 2.5231 26 1 3.4474 -5.6311 2.4593 27 1 4.0980 -5.2543 0.8462 28 1 3.0474 -3.2555 1.8703 29 1 1.5117 -4.1424 2.0260 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306464334.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:19 Heat of formation + Delta-G solvation = -58.984892 kcal Electronic energy + Delta-G solvation = -11676.899559 eV Core-core repulsion = 9599.385432 eV Total energy + Delta-G solvation = -2077.514127 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.74585 -35.41392 -33.11670 -30.66299 -30.30022 -27.40992 -23.55978 -22.14784 -20.90994 -19.31221 -17.07708 -16.41231 -15.51377 -14.60155 -14.34337 -13.62530 -13.26723 -12.87875 -12.33228 -12.09031 -11.71423 -11.44888 -11.12090 -10.81302 -10.69410 -10.50485 -10.13118 -9.95507 -9.74839 -9.52525 -9.28864 -8.79058 -6.86771 -5.69525 -2.97510 3.47518 3.51518 3.52920 4.48284 4.65460 5.09945 5.12848 5.26874 5.60679 5.66637 5.74331 5.90110 5.96856 5.99669 6.14438 6.29148 6.37278 6.48402 6.67458 6.78666 6.84856 7.11171 7.28181 7.75167 7.87235 8.49789 9.60111 10.20940 10.55815 11.53442 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.074614 B = 0.009713 C = 0.009389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.176826 B = 2881.961715 C = 2981.583341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.236 4.236 8 H 0.068 0.932 9 N -0.726 5.726 10 C 0.179 3.821 11 C -0.120 4.120 12 C -0.107 4.107 13 C 0.106 3.894 14 O -0.561 6.561 15 C -0.150 4.150 16 C -0.130 4.130 17 H 0.255 0.745 18 H 0.383 0.617 19 H 0.041 0.959 20 H 0.058 0.942 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.044 0.956 25 H 0.370 0.630 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.160 -12.101 1.788 13.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.368 4.368 8 H 0.086 0.914 9 N -0.366 5.366 10 C 0.069 3.931 11 C -0.158 4.158 12 C -0.145 4.145 13 C 0.048 3.952 14 O -0.366 6.366 15 C -0.188 4.188 16 C -0.170 4.170 17 H 0.065 0.935 18 H 0.217 0.783 19 H 0.059 0.941 20 H 0.077 0.923 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.216 0.784 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.994 -11.773 1.186 12.843 hybrid contribution 0.526 0.823 0.639 1.167 sum 5.520 -10.949 1.825 12.397 Atomic orbital electron populations 1.69659 1.05095 1.25627 1.57947 1.24735 0.95498 0.97610 1.03314 0.86282 0.78503 0.83718 0.77779 1.21333 1.21726 1.21372 1.19221 0.90917 0.84285 1.42340 0.91360 1.42437 1.05816 0.99803 1.88531 1.20202 0.94129 0.86041 0.92718 1.21705 0.99532 0.93587 1.01008 1.21498 1.00726 0.98339 0.93949 1.21785 0.85489 0.95780 0.92179 1.86554 1.31997 1.92905 1.25126 1.22250 0.99081 0.97443 1.00034 1.22153 0.99666 0.94122 1.01107 0.93541 0.78311 0.94073 0.92279 0.91459 0.91066 0.92020 0.93797 0.78362 0.92829 0.91649 0.92488 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.07 13.06 55.49 0.72 -28.34 15 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 15 3 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 15 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 15 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 7 C -0.24 -6.78 9.93 -15.06 -0.15 -6.93 15 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 15 9 N -0.73 -19.11 5.12 -53.42 -0.27 -19.39 15 10 C 0.18 3.76 2.77 -67.93 -0.19 3.58 15 11 C -0.12 -2.20 5.24 -26.73 -0.14 -2.34 15 12 C -0.11 -1.56 5.66 -26.73 -0.15 -1.71 15 13 C 0.11 1.44 3.77 -26.73 -0.10 1.34 15 14 O -0.56 -8.00 11.97 -35.23 -0.42 -8.42 15 15 C -0.15 -2.14 5.64 -26.73 -0.15 -2.29 15 16 C -0.13 -2.46 5.36 -26.73 -0.14 -2.60 15 17 H 0.25 7.66 8.31 -40.82 -0.34 7.32 15 18 H 0.38 10.78 7.80 -40.82 -0.32 10.46 15 19 H 0.04 0.88 8.08 -51.93 -0.42 0.46 15 20 H 0.06 1.10 8.14 -51.92 -0.42 0.68 15 21 H 0.07 1.32 7.68 -51.93 -0.40 0.92 15 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 23 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 24 H 0.04 0.50 8.14 -51.92 -0.42 0.08 15 25 H 0.37 3.73 9.08 45.56 0.41 4.14 15 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 29 H 0.06 1.22 7.68 -51.93 -0.40 0.82 15 LS Contribution 238.36 15.07 3.59 3.59 Total: -1.00 -31.73 238.36 -6.15 -37.88 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -3.63 Total: 8.36 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -1.12 Total: -11.52 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.45 Total: -47.73 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.42 Total: -8.42 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.73 -6.15 -37.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306464334.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.106 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds