Wall clock time and date at job start Mon Mar 30 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00108 * 2 1 4 4 H 1.48502 * 109.47257 * 240.00071 * 3 2 1 5 5 H 1.48495 * 109.47442 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46818 * 120.00559 * 3 2 1 7 7 C 1.38809 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00350 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00198 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00473 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47553 * 204.99780 * 10 9 7 12 12 C 1.52997 * 109.47201 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46862 * 60.00295 * 12 11 10 14 14 O 1.42903 * 109.47256 * 60.00148 * 13 12 11 15 15 C 1.53001 * 109.47329 * 299.99879 * 13 12 11 16 16 C 1.52997 * 109.47050 * 60.00237 * 15 13 12 17 17 H 0.97001 * 119.99697 * 359.97438 * 1 2 3 18 18 H 0.96996 * 120.00213 * 0.02562 * 9 7 2 19 19 H 1.09006 * 109.47173 * 325.00469 * 10 9 7 20 20 H 1.09009 * 109.46785 * 59.99979 * 11 10 9 21 21 H 1.08997 * 109.47329 * 300.00324 * 11 10 9 22 22 H 1.08997 * 109.47549 * 300.00564 * 12 11 10 23 23 H 1.08997 * 109.46932 * 180.02562 * 12 11 10 24 24 H 1.09008 * 109.47201 * 179.97438 * 13 12 11 25 25 H 0.96700 * 114.00311 * 180.02562 * 14 13 12 26 26 H 1.08999 * 109.47164 * 180.02562 * 15 13 12 27 27 H 1.08997 * 109.47124 * 299.99757 * 15 13 12 28 28 H 1.08997 * 109.46932 * 180.02562 * 16 15 13 29 29 H 1.08997 * 109.47549 * 59.99780 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.1807 -4.7522 -0.6101 12 6 1.9459 -6.0771 -0.6106 13 6 2.3102 -6.4561 0.8262 14 8 1.1165 -6.5958 1.5993 15 6 3.1874 -5.3608 1.4358 16 6 2.4222 -4.0359 1.4364 17 1 -0.4850 0.8401 0.0004 18 1 0.3555 -2.3881 -0.0005 19 1 2.9687 -3.5506 -0.5899 20 1 0.9215 -4.4823 -1.6339 21 1 0.2700 -4.8584 -0.0207 22 1 2.8564 -5.9706 -1.2002 23 1 1.3211 -6.8573 -1.0453 24 1 2.8550 -7.4003 0.8259 25 1 1.2720 -6.8355 2.5231 26 1 3.4474 -5.6311 2.4593 27 1 4.0980 -5.2543 0.8462 28 1 3.0474 -3.2555 1.8703 29 1 1.5117 -4.1424 2.0260 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306464334.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:18 Heat of formation + Delta-G solvation = -82.823653 kcal Electronic energy + Delta-G solvation = -11677.933285 eV Core-core repulsion = 9599.385432 eV Total energy + Delta-G solvation = -2078.547853 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.03833 -36.94520 -34.89265 -32.52694 -31.62716 -29.08842 -25.59442 -23.49734 -22.39480 -20.72261 -19.12301 -17.58897 -17.01836 -16.38987 -15.58294 -15.41574 -15.16961 -14.26714 -13.85902 -13.50477 -13.15061 -12.96173 -12.77805 -12.75308 -12.29722 -12.09788 -11.90695 -11.71629 -11.40425 -11.08424 -10.76779 -10.52534 -8.99707 -7.93883 -5.22722 1.45569 1.49497 1.55664 2.56241 3.38458 3.48801 3.84270 3.95235 4.03991 4.31144 4.37032 4.47249 4.67018 4.68865 4.71817 4.94630 5.06262 5.14295 5.21439 5.34222 5.37547 5.48876 5.58798 5.70494 6.28637 7.03585 7.33038 8.11418 8.34766 9.30089 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.074614 B = 0.009713 C = 0.009389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.176826 B = 2881.961715 C = 2981.583341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.080 4.080 3 Si 0.976 3.024 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.075 0.925 9 N -0.742 5.742 10 C 0.171 3.829 11 C -0.112 4.112 12 C -0.106 4.106 13 C 0.108 3.892 14 O -0.583 6.583 15 C -0.141 4.141 16 C -0.122 4.122 17 H 0.251 0.749 18 H 0.369 0.631 19 H 0.039 0.961 20 H 0.048 0.952 21 H 0.047 0.953 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.388 0.612 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.882 -13.425 1.960 15.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.093 0.907 9 N -0.381 5.381 10 C 0.063 3.937 11 C -0.150 4.150 12 C -0.143 4.143 13 C 0.050 3.950 14 O -0.391 6.391 15 C -0.179 4.179 16 C -0.162 4.162 17 H 0.059 0.941 18 H 0.200 0.800 19 H 0.058 0.942 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.107 0.893 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.237 0.763 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.761 -13.146 1.373 14.846 hybrid contribution -0.012 1.170 0.592 1.311 sum 6.750 -11.976 1.965 13.886 Atomic orbital electron populations 1.69835 1.06758 1.26085 1.59803 1.25609 0.96404 1.01236 1.03958 0.85179 0.77161 0.79008 0.78236 1.20222 1.22134 1.20382 1.19627 0.91388 0.85393 1.40849 0.90729 1.42700 1.05358 1.01267 1.88757 1.20494 0.93996 0.84854 0.94362 1.21581 0.98832 0.95038 0.99570 1.21544 1.01159 0.95982 0.95662 1.21844 0.85303 0.96905 0.90998 1.86521 1.32767 1.93069 1.26729 1.22210 0.98895 0.94742 1.02100 1.21946 0.99160 0.96467 0.98622 0.94063 0.79984 0.94245 0.93346 0.93369 0.89258 0.90659 0.90011 0.76299 0.90370 0.90400 0.94691 0.93876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.02 13.06 21.65 0.28 -61.74 15 2 C -0.08 -4.78 5.50 84.86 0.47 -4.32 15 3 Si 0.98 47.37 29.55 68.60 2.03 49.40 15 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 15 6 H -0.28 -12.94 7.11 99.48 0.71 -12.24 15 7 C -0.24 -13.97 9.93 84.03 0.83 -13.14 15 8 H 0.07 4.13 7.83 -2.91 -0.02 4.11 15 9 N -0.74 -39.99 5.12 -322.92 -1.65 -41.64 15 10 C 0.17 7.18 2.77 44.99 0.12 7.31 15 11 C -0.11 -4.05 5.24 30.59 0.16 -3.89 15 12 C -0.11 -2.79 5.66 30.59 0.17 -2.61 15 13 C 0.11 2.52 3.77 30.59 0.12 2.64 15 14 O -0.58 -15.12 11.97 -148.98 -1.78 -16.90 15 15 C -0.14 -3.60 5.64 30.59 0.17 -3.42 15 16 C -0.12 -4.52 5.36 30.60 0.16 -4.36 15 17 H 0.25 15.44 8.31 -92.71 -0.77 14.67 15 18 H 0.37 21.57 7.80 -92.71 -0.72 20.85 15 19 H 0.04 1.66 8.08 -2.38 -0.02 1.64 15 20 H 0.05 1.81 8.14 -2.38 -0.02 1.79 15 21 H 0.05 1.91 7.68 -2.39 -0.02 1.89 15 22 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 24 H 0.08 1.41 8.14 -2.38 -0.02 1.39 15 25 H 0.39 6.70 9.08 -74.06 -0.67 6.03 15 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 15 27 H 0.08 1.83 8.14 -2.39 -0.02 1.81 15 28 H 0.03 1.41 8.14 -2.39 -0.02 1.39 15 29 H 0.04 1.73 7.68 -2.39 -0.02 1.71 15 Total: -1.00 -68.82 238.36 0.82 -68.00 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -0.26 Total: 24.68 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 2.21 Total: -21.79 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -1.37 Total: -103.38 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -1.78 Total: -16.90 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -68.82 0.82 -68.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306464334.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.823 kcal (2) G-P(sol) polarization free energy of solvation -68.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds