Wall clock time and date at job start Mon Mar 30 2020 01:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.46895 * 110.99508 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.36829 * 34.30043 * 11 10 9 13 13 C 1.54472 * 110.40382 * 156.63309 * 11 10 9 14 14 C 1.54648 * 102.91824 * 118.38662 * 13 11 10 15 15 O 1.45946 * 105.10712 * 342.26369 * 14 13 11 16 16 C 1.34567 * 108.40481 * 32.39418 * 15 14 13 17 17 O 1.20821 * 125.94565 * 146.67743 * 16 15 14 18 18 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 20 20 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 21 21 H 1.00901 * 110.99925 * 56.04812 * 10 9 7 22 22 H 1.08993 * 110.70038 * 236.80250 * 13 11 10 23 23 H 1.08997 * 110.70203 * 0.02712 * 13 11 10 24 24 H 1.08998 * 110.34102 * 223.33262 * 14 13 11 25 25 H 1.09000 * 110.26287 * 101.15279 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5055 -4.9070 -0.0011 12 1 0.5828 -4.8379 -0.5773 13 6 2.4173 -6.0138 -0.5754 14 6 2.5614 -6.9937 0.6123 15 8 2.1589 -6.2283 1.7880 16 6 1.2104 -5.3485 1.4178 17 8 0.2846 -4.9754 2.0987 18 1 -0.4849 -0.8401 0.0004 19 1 0.6248 -2.5571 0.8897 20 1 0.6241 -2.5567 -0.8903 21 1 2.8406 -3.5486 0.7809 22 1 1.9410 -6.5031 -1.4249 23 1 3.3873 -5.6055 -0.8587 24 1 3.5965 -7.3212 0.7099 25 1 1.9033 -7.8518 0.4757 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306550446.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:11 Heat of formation + Delta-G solvation = -111.376763 kcal Electronic energy + Delta-G solvation = -11240.543264 eV Core-core repulsion = 9024.924161 eV Total energy + Delta-G solvation = -2215.619103 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.12223 -38.72884 -37.30431 -34.96494 -32.38271 -29.01259 -26.81372 -24.23112 -23.26138 -22.19311 -19.29242 -18.22815 -18.08811 -17.63747 -16.16129 -15.86728 -15.57061 -14.98941 -14.76865 -14.31005 -14.09555 -13.23204 -13.13274 -12.73531 -12.56307 -12.30951 -11.91547 -11.87612 -11.47751 -10.84827 -10.67591 -9.53497 -8.77227 -6.49267 0.65413 1.53109 1.62763 1.81132 2.19909 2.53640 2.83034 3.08937 3.22897 3.47374 3.95075 4.02816 4.24397 4.61095 4.65420 4.84919 4.91538 5.06691 5.47408 5.59724 5.83042 6.13964 6.22173 6.27712 6.45787 7.33867 8.62803 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.071939 B = 0.009526 C = 0.009065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.127452 B = 2938.503976 C = 3088.164757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.038 4.038 3 Si 1.130 2.870 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.616 4.616 8 H 0.063 0.937 9 C 0.186 3.814 10 N -0.637 5.637 11 C 0.019 3.981 12 H 0.104 0.896 13 C -0.131 4.131 14 C 0.050 3.950 15 O -0.369 6.369 16 C 0.453 3.547 17 O -0.500 6.500 18 H 0.253 0.747 19 H -0.046 1.046 20 H 0.008 0.992 21 H 0.339 0.661 22 H 0.125 0.875 23 H 0.108 0.892 24 H 0.144 0.856 25 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.511 -13.185 -2.397 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.235 4.235 3 Si 0.950 3.050 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.654 4.654 8 H 0.081 0.919 9 C 0.058 3.942 10 N -0.269 5.269 11 C -0.093 4.093 12 H 0.122 0.878 13 C -0.169 4.169 14 C -0.023 4.023 15 O -0.287 6.287 16 C 0.292 3.708 17 O -0.384 6.384 18 H 0.062 0.938 19 H -0.028 1.028 20 H 0.026 0.974 21 H 0.157 0.843 22 H 0.143 0.857 23 H 0.127 0.873 24 H 0.162 0.838 25 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.056 -11.443 -2.557 13.684 hybrid contribution -0.753 -1.608 1.060 2.068 sum 6.303 -13.051 -1.497 14.570 Atomic orbital electron populations 1.70897 1.08105 1.29709 1.48447 1.27610 0.96465 1.07140 0.92322 0.82784 0.74199 0.70287 0.77743 1.19990 1.20669 1.18805 1.22364 0.95293 0.92198 1.55555 0.91883 1.19549 0.91389 0.90156 0.93064 1.60965 1.18360 0.99531 1.48028 1.23309 1.00695 0.93370 0.91930 0.87751 1.23055 1.01820 0.93168 0.98855 1.24619 1.05032 0.93062 0.79572 1.87229 1.51587 1.49944 1.39914 1.24955 0.78357 0.76638 0.90850 1.90661 1.27776 1.56932 1.63003 0.93823 1.02815 0.97377 0.84279 0.85672 0.87349 0.83840 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.56 13.65 21.45 0.29 -59.27 15 2 C -0.04 -2.23 5.46 84.65 0.46 -1.77 15 3 Si 1.13 50.76 29.90 68.60 2.05 52.81 15 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 15 7 C -0.62 -35.93 9.32 25.60 0.24 -35.69 15 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 15 9 C 0.19 10.15 4.59 85.56 0.39 10.55 15 10 N -0.64 -26.90 6.21 -495.51 -3.08 -29.97 15 11 C 0.02 0.65 3.35 44.93 0.15 0.80 15 12 H 0.10 3.62 7.84 -2.39 -0.02 3.60 15 13 C -0.13 -2.58 6.98 31.66 0.22 -2.36 15 14 C 0.05 0.83 7.85 72.54 0.57 1.40 15 15 O -0.37 -11.15 11.17 -55.12 -0.62 -11.77 15 16 C 0.45 17.07 7.82 71.49 0.56 17.63 15 17 O -0.50 -23.76 18.00 21.57 0.39 -23.37 15 18 H 0.25 16.49 7.22 -92.71 -0.67 15.82 15 19 H -0.05 -2.79 8.01 -2.39 -0.02 -2.81 15 20 H 0.01 0.47 7.94 -2.39 -0.02 0.45 15 21 H 0.34 14.14 8.46 -89.69 -0.76 13.38 15 22 H 0.13 1.70 8.14 -2.39 -0.02 1.68 15 23 H 0.11 2.09 7.97 -2.39 -0.02 2.07 15 24 H 0.14 1.45 8.14 -2.39 -0.02 1.43 15 25 H 0.11 1.25 8.14 -2.39 -0.02 1.23 15 Total: -1.00 -75.59 225.29 2.17 -73.42 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 0.54 Total: 7.60 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 2.59 Total: -9.45 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -2.79 Total: -89.24 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.23 Total: -35.14 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.05 Total: 52.81 kcal Total: -75.59 2.17 -73.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306550446.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.958 kcal (2) G-P(sol) polarization free energy of solvation -75.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds