Wall clock time and date at job start Mon Mar 30 2020 01:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36932 * 120.00229 * 2 1 4 4 H 1.07996 * 120.00399 * 204.07669 * 3 2 1 5 5 C 1.38815 * 120.00212 * 24.07651 * 3 2 1 6 6 N 1.31623 * 119.99635 * 15.00463 * 5 3 2 7 7 Si 1.86794 * 120.00364 * 195.00708 * 5 3 2 8 8 H 1.48499 * 109.47184 * 89.99895 * 7 5 3 9 9 H 1.48506 * 109.47349 * 210.00095 * 7 5 3 10 10 H 1.48506 * 109.47236 * 329.99895 * 7 5 3 11 11 C 1.46500 * 120.00003 * 179.97438 * 2 1 3 12 12 C 1.53000 * 112.84673 * 103.36028 * 11 2 1 13 13 N 1.46903 * 109.47627 * 310.86308 * 12 11 2 14 14 C 1.53779 * 113.61750 * 332.05877 * 11 2 1 15 15 C 1.53774 * 87.08093 * 270.88242 * 14 11 2 16 16 C 1.53780 * 113.61946 * 234.55834 * 11 2 1 17 17 H 1.09003 * 109.47284 * 265.14564 * 1 2 3 18 18 H 1.08998 * 109.47045 * 145.14254 * 1 2 3 19 19 H 1.09004 * 109.46893 * 25.14209 * 1 2 3 20 20 H 0.96996 * 119.99673 * 179.97438 * 6 5 3 21 21 H 1.09001 * 109.47134 * 70.86272 * 12 11 2 22 22 H 1.09001 * 109.47411 * 190.86316 * 12 11 2 23 23 H 1.00895 * 111.00517 * 180.15825 * 13 12 11 24 24 H 1.00904 * 110.99835 * 304.11736 * 13 12 11 25 25 H 1.09009 * 113.61232 * 25.42407 * 14 11 2 26 26 H 1.09000 * 113.62072 * 156.33054 * 14 11 2 27 27 H 1.09005 * 113.61837 * 220.01689 * 15 14 11 28 28 H 1.09002 * 113.61936 * 89.11022 * 15 14 11 29 29 H 1.08996 * 113.61405 * 203.66787 * 16 11 2 30 30 H 1.08995 * 113.61079 * 334.56905 * 16 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1592 1.2266 -0.3815 5 6 1.5463 2.3358 0.4904 6 7 0.4524 2.2463 1.2170 7 14 2.2866 4.0101 0.1193 8 1 1.7047 4.5405 -1.1398 9 1 1.9858 4.9428 1.2351 10 1 3.7580 3.8782 -0.0325 11 6 2.1975 -1.2687 0.0006 12 6 2.7767 -1.6209 -1.3711 13 7 1.7324 -1.4796 -2.3946 14 6 1.4276 -2.4243 0.6613 15 6 2.0718 -1.9905 1.9885 16 6 3.2131 -1.3933 1.1485 17 1 -0.3634 -0.0870 1.0240 18 1 -0.3633 -0.8433 -0.5873 19 1 -0.3633 0.9303 -0.4366 20 1 0.0310 3.0498 1.5600 21 1 3.6032 -0.9482 -1.6001 22 1 3.1377 -2.6493 -1.3599 23 1 2.0897 -1.7093 -3.3098 24 1 0.9264 -2.0432 -2.1691 25 1 0.3452 -2.2969 0.6392 26 1 1.7456 -3.4106 0.3233 27 1 2.3827 -2.8255 2.6165 28 1 1.4925 -1.2439 2.5316 29 1 4.0193 -2.0976 0.9437 30 1 3.5723 -0.4335 1.5197 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306894253.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:44 Heat of formation + Delta-G solvation = 47.253699 kcal Electronic energy + Delta-G solvation = -12059.299222 eV Core-core repulsion = 10084.110608 eV Total energy + Delta-G solvation = -1975.188613 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.78196 -33.73189 -33.10496 -30.18166 -26.71954 -25.60638 -24.21937 -22.51797 -21.02193 -17.94548 -16.03498 -15.53739 -15.18104 -14.25850 -13.76363 -13.54141 -13.08527 -12.20784 -12.14940 -11.79347 -11.55681 -11.00327 -10.75115 -10.56704 -10.20203 -10.11416 -10.01219 -9.68671 -9.45662 -9.11556 -8.33155 -7.91261 -6.48820 -5.58973 -2.98546 3.48022 3.54312 3.55113 4.61219 5.16208 5.34424 5.40626 5.60342 5.61185 5.71210 5.96512 6.11885 6.25892 6.34811 6.43612 6.55227 6.70026 6.98575 7.01944 7.09665 7.27990 7.55202 7.81727 7.88145 7.97481 8.07963 8.60011 9.41453 10.07120 10.57981 11.48172 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.043743 B = 0.015570 C = 0.014443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.952195 B = 1797.918314 C = 1938.143263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.560 5.560 3 C -0.229 4.229 4 H 0.062 0.938 5 C -0.003 4.003 6 N -0.910 5.910 7 Si 0.901 3.099 8 H -0.290 1.290 9 H -0.294 1.294 10 H -0.282 1.282 11 C 0.189 3.811 12 C 0.064 3.936 13 N -0.827 5.827 14 C -0.152 4.152 15 C -0.125 4.125 16 C -0.148 4.148 17 H 0.009 0.991 18 H -0.006 1.006 19 H 0.052 0.948 20 H 0.249 0.751 21 H 0.063 0.937 22 H 0.007 0.993 23 H 0.323 0.677 24 H 0.331 0.669 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.470 -8.361 -2.371 9.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.281 5.281 3 C -0.359 4.359 4 H 0.079 0.921 5 C -0.200 4.200 6 N -0.556 5.556 7 Si 0.732 3.268 8 H -0.217 1.217 9 H -0.221 1.221 10 H -0.207 1.207 11 C 0.098 3.902 12 C -0.069 4.069 13 N -0.355 5.355 14 C -0.190 4.190 15 C -0.163 4.163 16 C -0.187 4.187 17 H 0.027 0.973 18 H 0.013 0.987 19 H 0.071 0.929 20 H 0.059 0.941 21 H 0.081 0.919 22 H 0.025 0.975 23 H 0.134 0.866 24 H 0.143 0.857 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.341 -7.433 -2.072 8.063 hybrid contribution 0.527 -0.046 -0.326 0.622 sum 2.868 -7.478 -2.398 8.361 Atomic orbital electron populations 1.20596 0.82668 0.97157 0.96522 1.43244 1.01080 0.98850 1.84944 1.19008 0.98736 0.85451 1.32683 0.92051 1.24930 0.98525 0.98215 0.98376 1.70079 1.21784 1.26995 1.36707 0.86302 0.78547 0.84691 0.77290 1.21731 1.22084 1.20726 1.20656 0.92219 0.87339 0.89982 1.22233 0.94350 0.96132 0.94216 1.58423 1.09211 1.64124 1.03696 1.23240 1.00514 0.97355 0.97937 1.22584 0.98550 0.99510 0.95639 1.23182 0.96155 1.00889 0.98506 0.97255 0.98734 0.92900 0.94054 0.91885 0.97480 0.86614 0.85707 0.91426 0.91656 0.93392 0.89756 0.92047 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.43 7.72 59.85 0.46 4.89 16 2 N -0.56 -14.09 2.57 -165.26 -0.42 -14.51 16 3 C -0.23 -6.39 8.71 -15.06 -0.13 -6.52 16 4 H 0.06 1.72 7.87 -52.49 -0.41 1.31 16 5 C 0.00 -0.09 4.98 -17.43 -0.09 -0.18 16 6 N -0.91 -27.07 10.96 55.49 0.61 -26.46 16 7 Si 0.90 22.63 29.58 -169.99 -5.03 17.60 16 8 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 9 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 11 C 0.19 3.92 0.77 -131.01 -0.10 3.82 16 12 C 0.06 1.19 6.34 -3.82 -0.02 1.16 16 13 N -0.83 -14.64 9.35 -10.37 -0.10 -14.73 16 14 C -0.15 -2.78 6.98 -25.92 -0.18 -2.96 16 15 C -0.13 -2.36 7.99 -25.92 -0.21 -2.57 16 16 C -0.15 -2.91 7.21 -25.92 -0.19 -3.10 16 17 H 0.01 0.25 7.86 -51.93 -0.41 -0.16 16 18 H -0.01 -0.13 7.22 -51.93 -0.38 -0.50 16 19 H 0.05 1.47 6.80 -51.93 -0.35 1.12 16 20 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 21 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 22 H 0.01 0.12 7.96 -51.93 -0.41 -0.30 16 23 H 0.32 4.78 9.08 -39.29 -0.36 4.43 16 24 H 0.33 5.52 8.87 -39.29 -0.35 5.17 16 25 H 0.07 1.29 6.35 -51.92 -0.33 0.96 16 26 H 0.06 1.03 7.97 -51.93 -0.41 0.61 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 29 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 30 H 0.08 1.72 7.46 -51.93 -0.39 1.33 16 LS Contribution 242.76 15.07 3.66 3.66 Total: -1.00 -29.95 242.76 -6.36 -36.31 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.62 Total: 3.59 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -0.46 Total: -5.45 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.09 Total: -55.71 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.95 -6.36 -36.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306894253.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.566 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds