Wall clock time and date at job start Mon Mar 30 2020 01:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36932 * 120.00229 * 2 1 4 4 H 1.07996 * 120.00399 * 204.07669 * 3 2 1 5 5 C 1.38815 * 120.00212 * 24.07651 * 3 2 1 6 6 N 1.31623 * 119.99635 * 15.00463 * 5 3 2 7 7 Si 1.86794 * 120.00364 * 195.00708 * 5 3 2 8 8 H 1.48499 * 109.47184 * 89.99895 * 7 5 3 9 9 H 1.48506 * 109.47349 * 210.00095 * 7 5 3 10 10 H 1.48506 * 109.47236 * 329.99895 * 7 5 3 11 11 C 1.46500 * 120.00003 * 179.97438 * 2 1 3 12 12 C 1.53000 * 112.84673 * 103.36028 * 11 2 1 13 13 N 1.46903 * 109.47627 * 310.86308 * 12 11 2 14 14 C 1.53779 * 113.61750 * 332.05877 * 11 2 1 15 15 C 1.53774 * 87.08093 * 270.88242 * 14 11 2 16 16 C 1.53780 * 113.61946 * 234.55834 * 11 2 1 17 17 H 1.09003 * 109.47284 * 265.14564 * 1 2 3 18 18 H 1.08998 * 109.47045 * 145.14254 * 1 2 3 19 19 H 1.09004 * 109.46893 * 25.14209 * 1 2 3 20 20 H 0.96996 * 119.99673 * 179.97438 * 6 5 3 21 21 H 1.09001 * 109.47134 * 70.86272 * 12 11 2 22 22 H 1.09001 * 109.47411 * 190.86316 * 12 11 2 23 23 H 1.00895 * 111.00517 * 180.15825 * 13 12 11 24 24 H 1.00904 * 110.99835 * 304.11736 * 13 12 11 25 25 H 1.09009 * 113.61232 * 25.42407 * 14 11 2 26 26 H 1.09000 * 113.62072 * 156.33054 * 14 11 2 27 27 H 1.09005 * 113.61837 * 220.01689 * 15 14 11 28 28 H 1.09002 * 113.61936 * 89.11022 * 15 14 11 29 29 H 1.08996 * 113.61405 * 203.66787 * 16 11 2 30 30 H 1.08995 * 113.61079 * 334.56905 * 16 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1592 1.2266 -0.3815 5 6 1.5463 2.3358 0.4904 6 7 0.4524 2.2463 1.2170 7 14 2.2866 4.0101 0.1193 8 1 1.7047 4.5405 -1.1398 9 1 1.9858 4.9428 1.2351 10 1 3.7580 3.8782 -0.0325 11 6 2.1975 -1.2687 0.0006 12 6 2.7767 -1.6209 -1.3711 13 7 1.7324 -1.4796 -2.3946 14 6 1.4276 -2.4243 0.6613 15 6 2.0718 -1.9905 1.9885 16 6 3.2131 -1.3933 1.1485 17 1 -0.3634 -0.0870 1.0240 18 1 -0.3633 -0.8433 -0.5873 19 1 -0.3633 0.9303 -0.4366 20 1 0.0310 3.0498 1.5600 21 1 3.6032 -0.9482 -1.6001 22 1 3.1377 -2.6493 -1.3599 23 1 2.0897 -1.7093 -3.3098 24 1 0.9264 -2.0432 -2.1691 25 1 0.3452 -2.2969 0.6392 26 1 1.7456 -3.4106 0.3233 27 1 2.3827 -2.8255 2.6165 28 1 1.4925 -1.2439 2.5316 29 1 4.0193 -2.0976 0.9437 30 1 3.5723 -0.4335 1.5197 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306894253.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:43 Heat of formation + Delta-G solvation = 26.210677 kcal Electronic energy + Delta-G solvation = -12060.211716 eV Core-core repulsion = 10084.110608 eV Total energy + Delta-G solvation = -1976.101107 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.39931 -35.72968 -34.54051 -32.25100 -28.53565 -27.33789 -25.89681 -24.41309 -22.60321 -19.71591 -18.07687 -17.12729 -16.82735 -16.09967 -15.39159 -15.13786 -14.89294 -13.96747 -13.78514 -13.62965 -13.16385 -12.91126 -12.75217 -12.36659 -12.05276 -12.00427 -11.95607 -11.45083 -11.08631 -10.75385 -10.45715 -9.27563 -8.53251 -7.74639 -5.15213 1.46040 1.48455 1.55737 2.56083 3.37871 3.62083 3.77336 3.91571 4.12566 4.22593 4.38430 4.70601 4.76762 4.87995 4.90826 5.00350 5.10688 5.15932 5.34148 5.45316 5.55123 5.65106 5.77249 5.82579 6.46038 6.54207 6.86190 7.27272 8.05369 8.48792 9.30435 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.043743 B = 0.015570 C = 0.014443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.952195 B = 1797.918314 C = 1938.143263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.195 3.805 2 N -0.572 5.572 3 C -0.227 4.227 4 H 0.057 0.943 5 C -0.059 4.059 6 N -0.941 5.941 7 Si 0.959 3.041 8 H -0.291 1.291 9 H -0.298 1.298 10 H -0.272 1.272 11 C 0.166 3.834 12 C 0.073 3.927 13 N -0.845 5.845 14 C -0.136 4.136 15 C -0.123 4.123 16 C -0.145 4.145 17 H -0.016 1.016 18 H 0.024 0.976 19 H 0.018 0.982 20 H 0.244 0.756 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.340 0.660 24 H 0.338 0.662 25 H 0.056 0.944 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.098 0.902 30 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.510 -10.166 -3.179 11.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.293 5.293 3 C -0.358 4.358 4 H 0.075 0.925 5 C -0.253 4.253 6 N -0.589 5.589 7 Si 0.789 3.211 8 H -0.219 1.219 9 H -0.225 1.225 10 H -0.197 1.197 11 C 0.077 3.923 12 C -0.060 4.060 13 N -0.375 5.375 14 C -0.173 4.173 15 C -0.161 4.161 16 C -0.184 4.184 17 H 0.002 0.998 18 H 0.042 0.958 19 H 0.037 0.963 20 H 0.053 0.947 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.153 0.847 24 H 0.151 0.849 25 H 0.075 0.925 26 H 0.123 0.877 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.410 -9.272 -2.902 10.297 hybrid contribution 0.239 0.433 -0.097 0.504 sum 3.648 -8.839 -2.999 10.022 Atomic orbital electron populations 1.20265 0.83221 0.96416 0.95121 1.43371 1.01022 0.99983 1.84952 1.19208 0.98476 0.86851 1.31257 0.92532 1.25608 0.99374 1.01314 0.99023 1.70226 1.23229 1.27204 1.38245 0.85365 0.78265 0.80868 0.76586 1.21851 1.22461 1.19673 1.21057 0.93065 0.86369 0.91819 1.22040 0.93738 0.97569 0.92701 1.58332 1.09555 1.64974 1.04610 1.23202 0.99558 0.98056 0.96519 1.22483 0.97757 0.99538 0.96299 1.23209 0.97109 1.00108 0.98014 0.99766 0.95787 0.96339 0.94727 0.93730 0.93920 0.84685 0.84929 0.92511 0.87668 0.89947 0.93838 0.88376 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.95 7.72 127.77 0.99 10.94 16 2 N -0.57 -28.71 2.57 -676.75 -1.74 -30.45 16 3 C -0.23 -12.80 8.71 84.04 0.73 -12.07 16 4 H 0.06 3.19 7.87 -2.91 -0.02 3.17 16 5 C -0.06 -3.44 4.98 84.86 0.42 -3.02 16 6 N -0.94 -57.68 10.96 21.65 0.24 -57.44 16 7 Si 0.96 47.31 29.58 68.60 2.03 49.34 16 8 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 9 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 C 0.17 6.55 0.77 4.13 0.00 6.56 16 12 C 0.07 2.46 6.34 86.30 0.55 3.01 16 13 N -0.84 -27.55 9.35 -186.71 -1.75 -29.29 16 14 C -0.14 -4.50 6.98 31.12 0.22 -4.28 16 15 C -0.12 -4.39 7.99 31.12 0.25 -4.15 16 16 C -0.15 -5.42 7.21 31.12 0.22 -5.20 16 17 H -0.02 -0.88 7.86 -2.39 -0.02 -0.90 16 18 H 0.02 1.06 7.22 -2.39 -0.02 1.04 16 19 H 0.02 1.03 6.80 -2.38 -0.02 1.01 16 20 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 21 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.04 1.17 7.96 -2.39 -0.02 1.15 16 23 H 0.34 9.06 9.08 -89.70 -0.81 8.25 16 24 H 0.34 10.21 8.87 -89.69 -0.80 9.41 16 25 H 0.06 2.02 6.35 -2.38 -0.02 2.01 16 26 H 0.11 2.71 7.97 -2.39 -0.02 2.69 16 27 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 28 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.10 2.94 8.10 -2.39 -0.02 2.92 16 30 H 0.04 1.80 7.46 -2.39 -0.02 1.78 16 Total: -1.00 -65.21 242.76 1.68 -63.53 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -0.48 Total: 12.52 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 3.38 Total: -8.21 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -3.25 Total: -117.18 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -65.21 1.68 -63.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306894253.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.744 kcal (2) G-P(sol) polarization free energy of solvation -65.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds