Wall clock time and date at job start Mon Mar 30 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99627 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99542 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46758 * 124.34868 * 269.72265 * 10 9 7 12 12 C 1.54666 * 105.38094 * 162.85698 * 11 10 9 13 13 H 1.09004 * 111.22487 * 267.58252 * 12 11 10 14 14 O 1.42896 * 110.82374 * 143.77758 * 12 11 10 15 15 C 1.54633 * 101.68131 * 25.76532 * 12 11 10 16 16 C 1.34422 * 124.34544 * 90.02639 * 10 9 7 17 17 O 1.21281 * 124.94430 * 0.42636 * 16 10 9 18 18 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 20 20 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 21 21 H 1.08995 * 110.24981 * 281.98487 * 11 10 9 22 22 H 1.09003 * 110.24606 * 43.98802 * 11 10 9 23 23 H 0.96702 * 113.99944 * 186.34817 * 14 12 11 24 24 H 1.08995 * 110.48646 * 216.30719 * 15 12 11 25 25 H 1.09002 * 110.48383 * 93.66916 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 2.7371 -4.2457 -1.2111 12 6 3.9879 -5.0286 -0.7479 13 1 4.8898 -4.4239 -0.8435 14 8 4.1175 -6.2536 -1.4723 15 6 3.6566 -5.2970 0.7385 16 6 2.6958 -4.1893 1.1104 17 8 2.4111 -3.8685 2.2448 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5570 -0.8897 20 1 0.6243 -2.5567 0.8903 21 1 1.9996 -4.9257 -1.6375 22 1 3.0177 -3.4864 -1.9411 23 1 4.8290 -6.8257 -1.1534 24 1 4.5591 -5.2395 1.3469 25 1 3.1795 -6.2703 0.8532 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307039402.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:52 Heat of formation + Delta-G solvation = -85.891353 kcal Electronic energy + Delta-G solvation = -11297.296661 eV Core-core repulsion = 9082.782689 eV Total energy + Delta-G solvation = -2214.513973 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.72420 -36.84114 -34.96611 -32.99460 -30.71168 -27.17349 -26.59286 -22.93509 -21.36467 -18.81431 -17.50327 -16.43849 -16.03179 -15.29341 -14.53764 -14.43194 -13.82637 -13.19523 -12.91450 -12.59068 -12.07859 -11.66019 -11.38019 -10.96335 -10.85009 -10.58520 -10.32851 -10.09821 -9.67844 -8.96772 -8.49358 -7.73579 -6.10109 -4.16054 3.27329 3.31222 3.35595 3.40358 3.83703 4.24139 4.41905 4.69791 4.82967 5.12771 5.23895 5.56526 5.78196 5.85073 6.05857 6.14274 6.94011 7.30539 7.49461 7.56936 7.86325 8.14690 8.18018 8.82277 9.03456 9.50171 10.97886 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.056059 B = 0.010981 C = 0.010466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.357909 B = 2549.206457 C = 2674.689421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.253 3.747 10 N -0.597 5.597 11 C 0.112 3.888 12 C 0.092 3.908 13 H 0.080 0.920 14 O -0.558 6.558 15 C -0.192 4.192 16 C 0.510 3.490 17 O -0.540 6.540 18 H 0.264 0.736 19 H 0.037 0.963 20 H 0.044 0.956 21 H 0.073 0.927 22 H 0.085 0.915 23 H 0.380 0.620 24 H 0.095 0.905 25 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.706 -9.180 -3.339 12.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.571 4.571 8 H 0.078 0.922 9 C 0.135 3.865 10 N -0.330 5.330 11 C -0.012 4.012 12 C 0.032 3.968 13 H 0.097 0.903 14 O -0.364 6.364 15 C -0.232 4.232 16 C 0.296 3.704 17 O -0.418 6.418 18 H 0.074 0.926 19 H 0.055 0.945 20 H 0.062 0.938 21 H 0.091 0.909 22 H 0.104 0.896 23 H 0.227 0.773 24 H 0.113 0.887 25 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.816 -8.555 -3.098 11.369 hybrid contribution 0.908 0.738 0.271 1.201 sum 7.724 -7.817 -2.826 11.347 Atomic orbital electron populations 1.69937 1.06039 1.27127 1.50166 1.24958 0.94925 0.99371 0.94877 0.86390 0.79962 0.83102 0.77668 1.19750 1.20846 1.20788 1.21489 0.93549 0.90568 1.51489 0.92198 1.19277 0.86953 0.81616 0.98630 1.48671 1.45130 1.34348 1.04857 1.21831 0.93946 0.96218 0.89238 1.22746 0.98590 0.85970 0.89480 0.90255 1.86486 1.58508 1.31493 1.59871 1.23134 1.01340 1.00678 0.98088 1.20413 0.81837 0.82965 0.85198 1.90672 1.62875 1.66998 1.21242 0.92610 0.94544 0.93830 0.90898 0.89625 0.77279 0.88665 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.80 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 15 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 15 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 7 C -0.53 -15.18 9.39 -34.44 -0.32 -15.50 15 8 H 0.06 1.70 7.81 -52.48 -0.41 1.29 15 9 C 0.25 6.73 5.69 -5.19 -0.03 6.70 15 10 N -0.60 -13.15 2.92 -173.67 -0.51 -13.65 15 11 C 0.11 1.91 7.11 -3.03 -0.02 1.89 15 12 C 0.09 1.24 4.55 -25.00 -0.11 1.13 15 13 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 14 O -0.56 -6.45 13.41 -35.23 -0.47 -6.92 15 15 C -0.19 -2.83 6.61 -26.74 -0.18 -3.01 15 16 C 0.51 11.05 8.02 -10.86 -0.09 10.96 15 17 O -0.54 -14.08 17.59 5.56 0.10 -13.98 15 18 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 19 H 0.04 0.97 8.14 -51.93 -0.42 0.55 15 20 H 0.04 1.29 7.92 -51.93 -0.41 0.88 15 21 H 0.07 1.18 8.10 -51.93 -0.42 0.76 15 22 H 0.09 1.44 8.14 -51.93 -0.42 1.02 15 23 H 0.38 2.50 9.11 45.56 0.42 2.91 15 24 H 0.09 1.23 8.14 -51.93 -0.42 0.80 15 25 H 0.10 1.37 8.10 -51.93 -0.42 0.95 15 LS Contribution 226.81 15.07 3.42 3.42 Total: -1.00 -33.71 226.81 -4.67 -38.38 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -2.07 Total: -2.00 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -0.85 Total: 3.81 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.23 Total: -39.46 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.37 Total: -20.91 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -33.71 -4.67 -38.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307039402.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.514 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds