Wall clock time and date at job start Mon Mar 30 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99627 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99542 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46758 * 124.34868 * 269.72265 * 10 9 7 12 12 C 1.54666 * 105.38094 * 162.85698 * 11 10 9 13 13 H 1.09004 * 111.22487 * 267.58252 * 12 11 10 14 14 O 1.42896 * 110.82374 * 143.77758 * 12 11 10 15 15 C 1.54633 * 101.68131 * 25.76532 * 12 11 10 16 16 C 1.34422 * 124.34544 * 90.02639 * 10 9 7 17 17 O 1.21281 * 124.94430 * 0.42636 * 16 10 9 18 18 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 20 20 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 21 21 H 1.08995 * 110.24981 * 281.98487 * 11 10 9 22 22 H 1.09003 * 110.24606 * 43.98802 * 11 10 9 23 23 H 0.96702 * 113.99944 * 186.34817 * 14 12 11 24 24 H 1.08995 * 110.48646 * 216.30719 * 15 12 11 25 25 H 1.09002 * 110.48383 * 93.66916 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 2.7371 -4.2457 -1.2111 12 6 3.9879 -5.0286 -0.7479 13 1 4.8898 -4.4239 -0.8435 14 8 4.1175 -6.2536 -1.4723 15 6 3.6566 -5.2970 0.7385 16 6 2.6958 -4.1893 1.1104 17 8 2.4111 -3.8685 2.2448 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5570 -0.8897 20 1 0.6243 -2.5567 0.8903 21 1 1.9996 -4.9257 -1.6375 22 1 3.0177 -3.4864 -1.9411 23 1 4.8290 -6.8257 -1.1534 24 1 4.5591 -5.2395 1.3469 25 1 3.1795 -6.2703 0.8532 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307039402.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:52 Heat of formation + Delta-G solvation = -113.217621 kcal Electronic energy + Delta-G solvation = -11298.481617 eV Core-core repulsion = 9082.782689 eV Total energy + Delta-G solvation = -2215.698929 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.26709 -38.15305 -36.59238 -35.00870 -32.32942 -28.87094 -28.23064 -24.96986 -22.60912 -20.47045 -18.93017 -18.25500 -17.68106 -16.83495 -16.35496 -16.05980 -15.20087 -14.61047 -14.57011 -14.15875 -13.80387 -13.45035 -12.94402 -12.92435 -12.67647 -12.26580 -11.91628 -11.72594 -11.27455 -10.72339 -10.59149 -9.56264 -8.27809 -6.44319 1.36547 1.38818 1.50986 1.67580 2.24754 2.41053 3.01023 3.12316 3.46136 3.61076 4.04720 4.39640 4.60608 4.67884 4.72456 4.91184 5.00629 5.09152 5.51189 5.78051 5.97021 6.45349 6.64733 6.92497 7.19021 7.35840 8.79929 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.056059 B = 0.010981 C = 0.010466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.357909 B = 2549.206457 C = 2674.689421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.280 1.280 7 C -0.551 4.551 8 H 0.058 0.942 9 C 0.265 3.735 10 N -0.608 5.608 11 C 0.101 3.899 12 C 0.116 3.884 13 H 0.100 0.900 14 O -0.561 6.561 15 C -0.170 4.170 16 C 0.490 3.510 17 O -0.598 6.598 18 H 0.269 0.731 19 H 0.028 0.972 20 H -0.001 1.001 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.406 0.594 24 H 0.123 0.877 25 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.862 -9.741 -4.250 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.206 1.206 7 C -0.589 4.589 8 H 0.076 0.924 9 C 0.144 3.856 10 N -0.340 5.340 11 C -0.022 4.022 12 C 0.056 3.944 13 H 0.118 0.882 14 O -0.370 6.370 15 C -0.210 4.210 16 C 0.279 3.721 17 O -0.481 6.481 18 H 0.078 0.922 19 H 0.046 0.954 20 H 0.017 0.983 21 H 0.099 0.901 22 H 0.104 0.896 23 H 0.258 0.742 24 H 0.141 0.859 25 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.010 -9.172 -4.046 13.478 hybrid contribution 0.190 0.834 0.531 1.006 sum 9.199 -8.338 -3.516 12.904 Atomic orbital electron populations 1.70054 1.07695 1.28433 1.50592 1.25932 0.95871 1.03329 0.94076 0.85266 0.78747 0.78101 0.78080 1.18896 1.19277 1.20589 1.21750 0.93548 0.91703 1.51944 0.92398 1.18762 0.87527 0.83294 0.95997 1.48694 1.44478 1.33437 1.07355 1.22096 0.96049 0.96713 0.87295 1.22445 0.97191 0.86747 0.88001 0.88192 1.86447 1.60116 1.30991 1.59445 1.23113 1.00308 0.98304 0.99302 1.21700 0.82208 0.84044 0.84109 1.90625 1.64940 1.69046 1.23450 0.92158 0.95413 0.98304 0.90117 0.89646 0.74210 0.85884 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 13.29 21.45 0.28 -55.98 15 2 C 0.01 0.41 5.46 84.65 0.46 0.88 15 3 Si 0.97 44.65 29.54 68.60 2.03 46.68 15 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 15 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 7 C -0.55 -32.08 9.39 25.60 0.24 -31.84 15 8 H 0.06 3.31 7.81 -2.91 -0.02 3.29 15 9 C 0.26 14.66 5.69 85.63 0.49 15.15 15 10 N -0.61 -27.04 2.92 -821.95 -2.40 -29.44 15 11 C 0.10 3.29 7.11 86.90 0.62 3.91 15 12 C 0.12 2.70 4.55 31.72 0.14 2.84 15 13 H 0.10 2.01 8.14 -2.38 -0.02 1.99 15 14 O -0.56 -10.32 13.41 -148.98 -2.00 -12.31 15 15 C -0.17 -4.47 6.61 30.59 0.20 -4.27 15 16 C 0.49 21.19 8.02 87.90 0.70 21.90 15 17 O -0.60 -32.14 17.59 -3.03 -0.05 -32.19 15 18 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 19 H 0.03 1.55 8.14 -2.38 -0.02 1.53 15 20 H 0.00 -0.07 7.92 -2.39 -0.02 -0.09 15 21 H 0.08 2.49 8.10 -2.39 -0.02 2.47 15 22 H 0.09 2.77 8.14 -2.39 -0.02 2.75 15 23 H 0.41 3.11 9.11 -74.06 -0.67 2.43 15 24 H 0.12 2.64 8.14 -2.39 -0.02 2.62 15 25 H 0.13 2.82 8.10 -2.39 -0.02 2.80 15 Total: -1.00 -75.57 226.81 1.24 -74.33 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: 0.52 Total: 0.35 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 2.86 Total: 8.57 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -2.11 Total: -85.42 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -2.05 Total: -44.51 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -75.57 1.24 -74.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307039402.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.888 kcal (2) G-P(sol) polarization free energy of solvation -75.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds