Wall clock time and date at job start Mon Mar 30 2020 02:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99993 * 2 1 4 4 H 1.48502 * 109.47326 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47231 * 299.99867 * 3 2 1 6 6 H 1.48502 * 109.47486 * 59.99712 * 3 2 1 7 7 C 1.38814 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99704 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99477 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46883 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46998 * 59.99945 * 11 10 9 13 13 O 1.42895 * 109.47000 * 300.00472 * 11 10 9 14 14 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 15 15 C 1.53778 * 113.61491 * 277.50196 * 14 11 10 16 16 C 1.53783 * 87.07956 * 220.02088 * 15 14 11 17 17 C 1.53773 * 87.08102 * 25.43038 * 16 15 14 18 18 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 19 19 H 0.96992 * 120.00556 * 0.02562 * 9 7 2 20 20 H 1.09001 * 109.46891 * 60.00526 * 10 9 7 21 21 H 1.08993 * 109.47378 * 299.99898 * 10 9 7 22 22 H 0.96696 * 114.00485 * 299.99339 * 13 11 10 23 23 H 1.09004 * 112.84725 * 48.80838 * 14 11 10 24 24 H 1.09005 * 113.61400 * 334.56254 * 15 14 11 25 25 H 1.08991 * 113.61726 * 105.47147 * 15 14 11 26 26 H 1.09009 * 113.61325 * 270.88331 * 16 15 14 27 27 H 1.08994 * 113.69301 * 139.99239 * 16 15 14 28 28 H 1.09008 * 113.61702 * 220.01805 * 17 16 15 29 29 H 1.09003 * 113.61646 * 89.12160 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0639 -4.8198 -0.0021 12 1 0.4369 -4.7614 -0.8918 13 8 0.2428 -4.7448 1.1650 14 6 1.8289 -6.1447 -0.0026 15 6 2.2962 -6.5857 -1.3997 16 6 1.9100 -8.0170 -0.9909 17 6 0.9167 -7.3827 -0.0031 18 1 -0.4850 0.8400 -0.0004 19 1 0.3557 -2.3881 -0.0005 20 1 2.6854 -3.7149 0.8879 21 1 2.6841 -3.7141 -0.8921 22 1 0.7351 -4.7907 1.9960 23 1 2.6135 -6.1808 0.7533 24 1 1.6881 -6.1841 -2.2104 25 1 3.3652 -6.4522 -1.5649 26 1 2.7176 -8.5656 -0.5062 27 1 1.4305 -8.5858 -1.7875 28 1 0.8721 -7.8927 0.9593 29 1 -0.0685 -7.1990 -0.4319 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307737475.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:59 Heat of formation + Delta-G solvation = -30.268436 kcal Electronic energy + Delta-G solvation = -11347.424006 eV Core-core repulsion = 9271.155118 eV Total energy + Delta-G solvation = -2076.268888 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.16211 -36.08590 -33.94769 -31.11451 -28.41604 -25.51087 -24.89817 -22.57538 -21.05281 -19.39866 -17.10358 -16.33009 -15.51695 -14.69692 -14.42678 -14.18803 -13.18333 -12.99620 -12.37198 -12.31222 -12.06820 -11.65576 -11.12812 -10.88861 -10.79331 -10.47312 -10.34842 -10.10406 -10.00499 -9.72245 -9.07092 -8.84812 -6.85973 -5.70510 -2.99396 3.46033 3.51013 3.53779 4.51331 4.65379 4.75327 4.81849 4.91949 5.27070 5.46429 5.53969 5.64684 5.77343 5.86193 5.90434 5.96617 6.03292 6.12100 6.35051 6.37351 6.57654 6.65448 6.88057 7.73390 8.17858 8.48347 9.59347 10.19022 10.54987 11.52148 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.086027 B = 0.008181 C = 0.007775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 325.402959 B = 3421.753954 C = 3600.461079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.124 3.876 11 C 0.109 3.891 12 H 0.095 0.905 13 O -0.554 6.554 14 C -0.141 4.141 15 C -0.132 4.132 16 C -0.145 4.145 17 C -0.126 4.126 18 H 0.254 0.746 19 H 0.388 0.612 20 H 0.017 0.983 21 H 0.024 0.976 22 H 0.369 0.631 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.795 -13.785 -0.445 14.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.372 5.372 10 C -0.004 4.004 11 C 0.050 3.950 12 H 0.112 0.888 13 O -0.358 6.358 14 C -0.161 4.161 15 C -0.169 4.169 16 C -0.183 4.183 17 C -0.164 4.164 18 H 0.064 0.936 19 H 0.223 0.777 20 H 0.034 0.966 21 H 0.042 0.958 22 H 0.215 0.785 23 H 0.107 0.893 24 H 0.101 0.899 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.456 -13.618 -0.899 14.078 hybrid contribution 0.725 0.947 0.382 1.252 sum 4.181 -12.671 -0.517 13.353 Atomic orbital electron populations 1.69696 1.05092 1.25435 1.57695 1.24757 0.95513 0.97658 1.03113 0.86122 0.78727 0.84190 0.77184 1.20605 1.21876 1.21866 1.19288 0.90975 0.84285 1.42651 0.91297 1.42299 1.06157 0.99584 1.89190 1.21306 0.93916 0.87002 0.98187 1.22155 0.92133 0.91861 0.88874 0.88755 1.86567 1.36997 1.96500 1.15718 1.23240 0.98908 0.95500 0.98409 1.22847 1.01304 0.95897 0.96860 1.22852 0.99445 0.96550 0.99441 1.22791 0.98064 0.96243 0.99281 0.93590 0.77732 0.96560 0.95790 0.78524 0.89323 0.89893 0.91522 0.90580 0.91772 0.91884 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.21 13.06 55.49 0.72 -28.49 15 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 15 3 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 15 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 15 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 15 7 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 15 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 15 9 N -0.73 -19.44 5.49 -59.90 -0.33 -19.77 15 10 C 0.12 2.59 5.92 -4.04 -0.02 2.57 15 11 C 0.11 1.88 2.82 -26.73 -0.08 1.80 15 12 H 0.09 1.73 7.94 -51.93 -0.41 1.31 15 13 O -0.55 -10.04 12.87 -35.23 -0.45 -10.50 15 14 C -0.14 -1.89 3.33 -89.81 -0.30 -2.19 15 15 C -0.13 -1.60 7.63 -25.92 -0.20 -1.80 15 16 C -0.15 -1.54 8.08 -25.92 -0.21 -1.75 15 17 C -0.13 -1.51 7.44 -25.93 -0.19 -1.70 15 18 H 0.25 7.65 8.31 -40.82 -0.34 7.32 15 19 H 0.39 11.13 7.54 -40.82 -0.31 10.82 15 20 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 15 21 H 0.02 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.37 5.55 9.04 45.56 0.41 5.96 15 23 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.08 1.04 7.96 -51.93 -0.41 0.62 15 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.08 0.73 8.14 -51.92 -0.42 0.30 15 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 15 28 H 0.06 0.70 8.14 -51.92 -0.42 0.28 15 29 H 0.08 1.04 8.10 -51.93 -0.42 0.62 15 LS Contribution 246.73 15.07 3.72 3.72 Total: -1.00 -32.00 246.73 -6.26 -38.26 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -3.65 Total: 9.61 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -1.24 Total: -10.75 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.40 Total: -48.26 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.45 Total: -10.50 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.00 -6.26 -38.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307737475.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.989 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds