Wall clock time and date at job start Mon Mar 30 2020 01:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99960 * 2 1 4 4 H 1.48504 * 109.46985 * 269.99600 * 3 2 1 5 5 H 1.48502 * 109.47121 * 29.99696 * 3 2 1 6 6 H 1.48504 * 109.47079 * 149.99734 * 3 2 1 7 7 C 1.37872 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00758 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99931 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47345 * 300.00238 * 9 7 2 11 11 O 1.42903 * 109.46442 * 60.00168 * 9 7 2 12 12 C 1.50696 * 109.47163 * 179.97438 * 9 7 2 13 13 C 1.35144 * 127.24601 * 99.71228 * 12 9 7 14 14 C 1.37813 * 114.75883 * 179.86454 * 13 12 9 15 15 N 1.30085 * 116.87991 * 0.44355 * 14 13 12 16 16 S 1.69598 * 107.15242 * 359.76418 * 15 14 13 17 17 H 0.96998 * 119.99752 * 0.02562 * 1 2 3 18 18 H 0.96700 * 114.00311 * 60.00230 * 11 9 7 19 19 H 1.08001 * 122.61502 * 0.04024 * 13 12 9 20 20 H 1.07994 * 121.55880 * 180.20568 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6247 -2.5563 0.8919 11 8 0.4291 -2.5755 -1.1648 12 6 2.2303 -3.6446 0.0015 13 6 2.6247 -4.3837 1.0619 14 6 3.5349 -5.3758 0.7674 15 7 3.9105 -5.4798 -0.4737 16 16 3.0873 -4.2818 -1.3475 17 1 -0.4850 0.8401 -0.0004 18 1 0.9209 -2.5307 -1.9962 19 1 2.2534 -4.2122 2.0614 20 1 3.9211 -6.0335 1.5319 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404405753.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:30 Heat of formation + Delta-G solvation = -37.904319 kcal Electronic energy + Delta-G solvation = -9079.359807 eV Core-core repulsion = 7173.846485 eV Total energy + Delta-G solvation = -1905.513322 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 185.025 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.65853 -37.70979 -34.37431 -32.49264 -28.92968 -26.11948 -23.81580 -20.86959 -19.15340 -18.71946 -17.02857 -16.74583 -15.68758 -15.18845 -15.01016 -14.56783 -13.81246 -13.49357 -13.06353 -12.83027 -12.26248 -12.13614 -11.55063 -11.33905 -10.89395 -10.63614 -10.14870 -9.59696 -8.21812 -6.49842 -0.09771 0.64983 1.07195 1.41457 1.42331 1.53038 1.69068 2.36915 3.04519 3.84980 4.17513 4.35470 4.47762 4.91050 5.08578 5.40448 5.58362 5.74195 5.88466 6.57826 7.16529 7.33298 8.82217 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.063274 B = 0.012842 C = 0.012249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.411926 B = 2179.798004 C = 2285.401588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.035 3.965 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.580 4.580 8 H 0.057 0.943 9 C 0.293 3.707 10 H 0.056 0.944 11 O -0.569 6.569 12 C -0.163 4.163 13 C -0.234 4.234 14 C 0.104 3.896 15 N -0.499 5.499 16 S 0.232 5.768 17 H 0.267 0.733 18 H 0.358 0.642 19 H 0.168 0.832 20 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.299 -5.390 0.958 7.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.169 4.169 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.618 4.618 8 H 0.076 0.924 9 C 0.233 3.767 10 H 0.074 0.926 11 O -0.373 6.373 12 C -0.293 4.293 13 C -0.268 4.268 14 C -0.094 4.094 15 N -0.320 5.320 16 S 0.383 5.617 17 H 0.076 0.924 18 H 0.204 0.796 19 H 0.185 0.815 20 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 5.500 -5.807 -0.575 8.019 hybrid contribution -0.018 1.213 1.496 1.926 sum 5.482 -4.594 0.920 7.211 Atomic orbital electron populations 1.70173 1.07527 1.28013 1.47153 1.25840 0.95527 1.02732 0.92838 0.85494 0.78641 0.78473 0.78645 1.19640 1.20416 1.19128 1.21728 0.93262 0.91198 1.55618 0.92432 1.17793 0.85711 0.86909 0.86293 0.92642 1.86582 1.38659 1.96192 1.15873 1.27054 1.01959 1.01006 0.99260 1.21569 1.04222 0.98970 1.02027 1.23296 0.94369 0.97495 0.94207 1.76746 1.25646 1.20033 1.09571 1.83662 1.34906 1.25932 1.17217 0.92396 0.79641 0.81501 0.76182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.93 12.84 21.45 0.28 -50.65 14 2 C 0.03 1.86 5.40 84.65 0.46 2.31 14 3 Si 0.96 41.81 29.54 68.60 2.03 43.84 14 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 14 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 14 6 H -0.27 -11.27 7.11 99.48 0.71 -10.57 14 7 C -0.58 -30.81 8.75 25.60 0.22 -30.58 14 8 H 0.06 3.03 7.74 -2.91 -0.02 3.01 14 9 C 0.29 14.61 3.33 29.10 0.10 14.71 14 10 H 0.06 3.01 8.14 -2.39 -0.02 2.99 14 11 O -0.57 -28.97 12.68 -148.98 -1.89 -30.86 14 12 C -0.16 -6.77 5.48 24.97 0.14 -6.64 14 13 C -0.23 -8.15 10.17 21.46 0.22 -7.94 14 14 C 0.10 3.12 11.27 84.85 0.96 4.07 14 15 N -0.50 -17.34 12.09 -62.60 -0.76 -18.09 14 16 S 0.23 8.64 23.18 -56.49 -1.31 7.33 14 17 H 0.27 14.34 8.31 -92.71 -0.77 13.57 14 18 H 0.36 16.25 8.58 -74.06 -0.64 15.61 14 19 H 0.17 5.14 8.06 -2.91 -0.02 5.11 14 20 H 0.22 4.35 8.06 -2.91 -0.02 4.33 14 Total: -1.00 -61.36 204.93 1.06 -60.30 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.63 Total: 12.19 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 2.09 Total: -24.06 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -0.48 Total: -68.74 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.89 Total: -30.86 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 8.64 SS G_CDS: -1.31 Total: 7.33 kcal Total: -61.36 1.06 -60.30 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404405753.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.398 kcal (2) G-P(sol) polarization free energy of solvation -61.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds