Wall clock time and date at job start Mon Mar 30 2020 02:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99891 * 2 1 4 4 H 1.09002 * 115.55310 * 4.41527 * 3 2 1 5 5 C 1.53005 * 117.49626 * 218.74342 * 3 2 1 6 6 C 1.52999 * 59.99973 * 252.48831 * 5 3 2 7 7 H 1.09001 * 117.50150 * 252.51259 * 6 5 3 8 8 C 1.50703 * 117.49577 * 107.48849 * 6 5 3 9 9 O 1.21289 * 120.00313 * 291.37736 * 8 6 5 10 10 N 1.34779 * 119.99578 * 111.37708 * 8 6 5 11 11 C 1.37095 * 119.99882 * 179.97438 * 10 8 6 12 12 H 1.08003 * 120.00062 * 0.02562 * 11 10 8 13 13 C 1.38952 * 119.99949 * 180.02562 * 11 10 8 14 14 N 1.31409 * 119.99855 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99937 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47302 * 89.99438 * 15 13 11 17 17 H 1.48492 * 109.46956 * 210.00140 * 15 13 11 18 18 H 1.48506 * 109.46676 * 329.99728 * 15 13 11 19 19 H 1.09003 * 109.46930 * 60.00414 * 1 2 3 20 20 H 1.08997 * 109.47300 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47069 * 300.00316 * 1 2 3 22 22 H 1.09004 * 117.49602 * 359.97438 * 5 3 2 23 23 H 1.09004 * 117.49357 * 144.97513 * 5 3 2 24 24 H 0.97001 * 120.00131 * 0.02562 * 10 8 6 25 25 H 0.96997 * 119.99418 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3058 2.1338 0.0757 5 6 3.2646 1.5202 -0.8494 6 6 3.3726 1.4727 0.6760 7 1 3.5643 2.4110 1.1966 8 6 3.9990 0.2479 1.2914 9 8 3.4240 -0.8187 1.2390 10 7 5.1982 0.3379 1.8999 11 6 5.7679 -0.7761 2.4601 12 1 5.2559 -1.7260 2.4135 13 6 7.0040 -0.6833 3.0879 14 7 7.6272 0.4723 3.1442 15 14 7.7806 -2.2014 3.8507 16 1 8.6240 -2.8874 2.8391 17 1 8.6220 -1.7994 5.0063 18 1 6.7129 -3.1243 4.3130 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 3.6467 0.6656 -1.4078 23 1 3.3851 2.4898 -1.3328 24 1 5.6579 1.1910 1.9421 25 1 8.4899 0.5371 3.5828 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575535460.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:11 Heat of formation + Delta-G solvation = -51.929754 kcal Electronic energy + Delta-G solvation = -11128.394329 eV Core-core repulsion = 8915.353042 eV Total energy + Delta-G solvation = -2213.041287 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.83720 -37.00215 -34.37359 -33.58831 -31.03595 -26.34657 -25.46526 -22.71674 -21.67695 -18.84606 -17.73180 -16.88983 -15.16270 -15.04352 -14.54513 -14.24993 -13.65256 -13.55996 -12.71568 -12.45735 -11.61192 -11.45231 -11.09384 -11.04487 -10.93765 -10.32835 -10.14408 -9.96842 -9.37447 -8.73456 -8.14829 -7.84665 -6.32938 -3.72391 3.22585 3.31238 3.37799 3.72337 4.00704 4.24242 4.51389 4.86106 5.21030 5.34326 5.50472 5.55288 5.60672 5.71739 5.88391 5.93074 5.99042 6.36690 6.60094 7.63355 7.66646 8.16649 8.74089 9.28562 9.67487 10.21961 10.85363 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.075123 B = 0.009663 C = 0.008828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.634721 B = 2896.834979 C = 3171.103761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.040 3.960 4 H 0.108 0.892 5 C -0.170 4.170 6 C -0.175 4.175 7 H 0.114 0.886 8 C 0.470 3.530 9 O -0.569 6.569 10 N -0.565 5.565 11 C -0.296 4.296 12 H 0.102 0.898 13 C 0.020 3.980 14 N -0.904 5.904 15 Si 0.929 3.071 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.270 1.270 19 H 0.034 0.966 20 H 0.083 0.917 21 H 0.037 0.963 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.392 0.608 25 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.020 4.305 -4.828 10.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C -0.020 4.020 4 H 0.125 0.875 5 C -0.208 4.208 6 C -0.197 4.197 7 H 0.132 0.868 8 C 0.256 3.744 9 O -0.452 6.452 10 N -0.202 5.202 11 C -0.426 4.426 12 H 0.120 0.880 13 C -0.181 4.181 14 N -0.546 5.546 15 Si 0.757 3.243 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.195 1.195 19 H 0.053 0.947 20 H 0.102 0.898 21 H 0.056 0.944 22 H 0.120 0.880 23 H 0.118 0.882 24 H 0.225 0.775 25 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.112 3.431 -4.759 10.012 hybrid contribution 0.639 0.155 0.477 0.812 sum -7.473 3.586 -4.282 9.330 Atomic orbital electron populations 1.22765 0.82405 1.02465 0.99054 1.88257 1.17965 1.23681 1.93615 1.22530 0.89071 0.86959 1.03400 0.87476 1.23355 1.01603 1.03113 0.92704 1.22739 1.00774 1.00223 0.95978 0.86792 1.18916 0.83079 0.88481 0.83969 1.90571 1.63162 1.29151 1.62360 1.41850 1.16788 1.11775 1.49745 1.19720 1.01390 0.90257 1.31207 0.88019 1.25240 0.96702 0.98128 0.98004 1.69621 1.16275 1.24057 1.44651 0.85866 0.78972 0.81058 0.78438 1.20474 1.20999 1.19461 0.94740 0.89849 0.94427 0.87997 0.88152 0.77515 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.88 101.05 1.10 1.52 15 2 O -0.32 -6.25 8.84 -57.36 -0.51 -6.76 15 3 C 0.04 0.67 6.40 -26.73 -0.17 0.50 15 4 H 0.11 1.38 7.93 -51.93 -0.41 0.97 15 5 C -0.17 -2.76 10.18 -26.73 -0.27 -3.04 15 6 C -0.18 -3.37 6.19 -91.77 -0.57 -3.94 15 7 H 0.11 1.87 8.14 -51.93 -0.42 1.45 15 8 C 0.47 12.01 7.57 -10.98 -0.08 11.93 15 9 O -0.57 -16.62 14.50 -16.57 -0.24 -16.86 15 10 N -0.57 -15.20 5.29 -10.96 -0.06 -15.26 15 11 C -0.30 -8.63 9.68 -14.93 -0.14 -8.78 15 12 H 0.10 3.10 7.16 -52.48 -0.38 2.73 15 13 C 0.02 0.56 5.50 -17.47 -0.10 0.47 15 14 N -0.90 -25.42 13.05 55.50 0.72 -24.70 15 15 Si 0.93 21.71 29.55 -169.99 -5.02 16.68 15 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 19 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 15 20 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.04 0.48 8.14 -51.93 -0.42 0.05 15 22 H 0.10 1.84 8.14 -51.93 -0.42 1.42 15 23 H 0.10 1.26 8.14 -51.93 -0.42 0.83 15 24 H 0.39 10.06 7.90 -40.82 -0.32 9.74 15 25 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 229.09 15.07 3.45 3.45 Total: -1.00 -33.46 229.09 -4.67 -38.13 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -2.78 Total: 6.66 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -0.24 Total: -1.34 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.67 Total: -39.96 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.75 Total: -23.63 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -33.46 -4.67 -38.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575535460.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.802 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds