Wall clock time and date at job start Mon Mar 30 2020 02:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42906 * 113.99767 * 2 1 4 4 H 1.08999 * 115.55013 * 355.72520 * 3 2 1 5 5 C 1.53000 * 117.49557 * 141.39194 * 3 2 1 6 6 C 1.53002 * 60.02940 * 107.50083 * 5 3 2 7 7 H 1.09000 * 117.49996 * 107.50493 * 6 5 3 8 8 C 1.50706 * 117.49668 * 252.51929 * 6 5 3 9 9 O 1.21293 * 119.99933 * 68.60764 * 8 6 5 10 10 N 1.34780 * 119.99945 * 248.60941 * 8 6 5 11 11 C 1.37097 * 119.99814 * 179.97438 * 10 8 6 12 12 H 1.08006 * 120.00225 * 0.02562 * 11 10 8 13 13 C 1.38944 * 120.00008 * 179.97438 * 11 10 8 14 14 N 1.31414 * 120.00257 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00269 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46850 * 90.00223 * 15 13 11 17 17 H 1.48500 * 109.47670 * 210.00298 * 15 13 11 18 18 H 1.48498 * 109.46959 * 330.00941 * 15 13 11 19 19 H 1.08999 * 109.46688 * 299.99733 * 1 2 3 20 20 H 1.08998 * 109.47155 * 59.99996 * 1 2 3 21 21 H 1.08992 * 109.46691 * 180.02562 * 1 2 3 22 22 H 1.09002 * 117.49833 * 215.00188 * 5 3 2 23 23 H 1.09002 * 117.49953 * 0.02562 * 5 3 2 24 24 H 0.96998 * 119.99800 * 0.02562 * 10 8 6 25 25 H 0.96996 * 120.00479 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3056 2.1338 -0.0733 5 6 3.2664 1.5195 0.8469 6 6 3.3719 1.4733 -0.6788 7 1 3.5631 2.4120 -1.1988 8 6 3.9971 0.2489 -1.2963 9 8 3.4220 -0.8177 -1.2437 10 7 5.1952 0.3392 -1.9069 11 6 5.7642 -0.7747 -2.4681 12 1 5.2521 -1.7245 -2.4214 13 6 6.9991 -0.6816 -3.0981 14 7 7.6220 0.4741 -3.1555 15 14 7.7747 -2.1995 -3.8622 16 1 7.3403 -2.3182 -5.2774 17 1 9.2540 -2.0809 -3.8068 18 1 7.3463 -3.4062 -3.1101 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0276 0.0005 22 1 3.3882 2.4887 1.3307 23 1 3.6497 0.6644 1.4037 24 1 5.6553 1.1921 -1.9486 25 1 8.4843 0.5390 -3.5949 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575535470.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:14 Heat of formation + Delta-G solvation = -51.919719 kcal Electronic energy + Delta-G solvation = -11128.159797 eV Core-core repulsion = 8915.118945 eV Total energy + Delta-G solvation = -2213.040852 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.83383 -37.00130 -34.37188 -33.58740 -31.03530 -26.34691 -25.46551 -22.71686 -21.67639 -18.84577 -17.73167 -16.88873 -15.16232 -15.04384 -14.54495 -14.25065 -13.65217 -13.55911 -12.71640 -12.45716 -11.61200 -11.45204 -11.09277 -11.04450 -10.93771 -10.32972 -10.14313 -9.96822 -9.37456 -8.73366 -8.14820 -7.84634 -6.32877 -3.72415 3.22482 3.31213 3.37945 3.72278 4.00655 4.24277 4.51267 4.86093 5.21099 5.34314 5.50451 5.55275 5.60641 5.71774 5.88399 5.93064 5.99045 6.36718 6.60107 7.63336 7.66605 8.16641 8.74079 9.28552 9.67475 10.21947 10.85403 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.075103 B = 0.009663 C = 0.008828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.729697 B = 2896.883764 C = 3171.108588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.040 3.960 4 H 0.108 0.892 5 C -0.170 4.170 6 C -0.175 4.175 7 H 0.114 0.886 8 C 0.470 3.530 9 O -0.570 6.570 10 N -0.565 5.565 11 C -0.296 4.296 12 H 0.102 0.898 13 C 0.020 3.980 14 N -0.904 5.904 15 Si 0.929 3.071 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.270 1.270 19 H 0.034 0.966 20 H 0.037 0.963 21 H 0.083 0.917 22 H 0.100 0.900 23 H 0.102 0.898 24 H 0.392 0.608 25 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.002 4.298 4.866 10.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C -0.020 4.020 4 H 0.125 0.875 5 C -0.208 4.208 6 C -0.197 4.197 7 H 0.132 0.868 8 C 0.256 3.744 9 O -0.452 6.452 10 N -0.202 5.202 11 C -0.426 4.426 12 H 0.120 0.880 13 C -0.181 4.181 14 N -0.546 5.546 15 Si 0.757 3.243 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.195 1.195 19 H 0.053 0.947 20 H 0.056 0.944 21 H 0.101 0.899 22 H 0.118 0.882 23 H 0.120 0.880 24 H 0.225 0.775 25 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.089 3.422 4.807 10.012 hybrid contribution 0.628 0.159 -0.498 0.817 sum -7.461 3.581 4.309 9.330 Atomic orbital electron populations 1.22764 0.82404 1.02465 0.99054 1.88258 1.17967 1.23682 1.93615 1.22541 0.89062 0.86955 1.03402 0.87471 1.23354 1.01568 1.03117 0.92721 1.22750 1.00805 1.00218 0.95956 0.86792 1.18919 0.83087 0.88480 0.83961 1.90572 1.63118 1.29144 1.62413 1.41849 1.16855 1.11797 1.49656 1.19719 1.01457 0.90270 1.31120 0.88019 1.25238 0.96700 0.98137 0.97999 1.69619 1.16372 1.24084 1.44538 0.85868 0.77848 0.81330 0.79291 1.20482 1.20994 1.19457 0.94748 0.94419 0.89850 0.88151 0.87997 0.77515 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.88 101.05 1.10 1.52 15 2 O -0.32 -6.25 8.84 -57.35 -0.51 -6.76 15 3 C 0.04 0.67 6.41 -26.70 -0.17 0.50 15 4 H 0.11 1.38 7.93 -51.93 -0.41 0.97 15 5 C -0.17 -2.76 10.18 -26.73 -0.27 -3.03 15 6 C -0.18 -3.37 6.19 -91.73 -0.57 -3.94 15 7 H 0.11 1.87 8.14 -51.93 -0.42 1.45 15 8 C 0.47 12.01 7.57 -10.98 -0.08 11.93 15 9 O -0.57 -16.62 14.50 -16.57 -0.24 -16.86 15 10 N -0.57 -15.20 5.29 -10.96 -0.06 -15.26 15 11 C -0.30 -8.63 9.68 -14.94 -0.14 -8.78 15 12 H 0.10 3.10 7.16 -52.48 -0.38 2.73 15 13 C 0.02 0.56 5.50 -17.47 -0.10 0.47 15 14 N -0.90 -25.43 13.05 55.50 0.72 -24.70 15 15 Si 0.93 21.71 29.55 -169.99 -5.02 16.68 15 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 19 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 15 20 H 0.04 0.48 8.14 -51.93 -0.42 0.05 15 21 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.10 1.26 8.14 -51.93 -0.42 0.83 15 23 H 0.10 1.84 8.14 -51.93 -0.42 1.42 15 24 H 0.39 10.06 7.90 -40.82 -0.32 9.74 15 25 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 229.10 15.07 3.45 3.45 Total: -1.00 -33.46 229.10 -4.67 -38.13 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -2.78 Total: 6.66 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -0.24 Total: -1.34 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.67 Total: -39.97 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.75 Total: -23.63 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -33.46 -4.67 -38.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575535470.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.790 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds