Wall clock time and date at job start Mon Mar 30 2020 01:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00002 * 2 1 4 4 H 1.48497 * 109.47384 * 269.99742 * 3 2 1 5 5 H 1.48507 * 109.47216 * 30.00009 * 3 2 1 6 6 H 1.48504 * 109.47156 * 149.99546 * 3 2 1 7 7 C 1.37879 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00417 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00007 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47200 * 299.99692 * 9 7 2 11 11 O 1.42904 * 109.47015 * 59.99975 * 9 7 2 12 12 C 1.50697 * 109.46963 * 179.97438 * 9 7 2 13 13 C 1.37804 * 122.62155 * 100.00262 * 12 9 7 14 14 N 1.30084 * 116.88523 * 180.02562 * 13 12 9 15 15 S 1.69604 * 107.14997 * 0.02562 * 14 13 12 16 16 C 1.35143 * 122.61923 * 280.02057 * 12 9 7 17 17 H 0.97000 * 120.00148 * 0.02562 * 1 2 3 18 18 H 0.96691 * 114.00152 * 60.00110 * 11 9 7 19 19 H 1.08001 * 121.55946 * 359.97438 * 13 12 9 20 20 H 1.08000 * 127.24830 * 359.94325 * 16 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5568 0.8903 11 8 0.4299 -2.5751 -1.1666 12 6 2.2303 -3.6446 0.0005 13 6 2.5599 -4.3402 1.1435 14 7 3.4185 -5.3090 1.0156 15 16 3.8571 -5.3756 -0.6214 16 6 2.8543 -4.0696 -1.1204 17 1 -0.4850 0.8400 -0.0004 18 1 0.9223 -2.5300 -1.9975 19 1 2.1261 -4.0922 2.1010 20 1 2.7462 -3.6729 -2.1191 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606244951.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:24 Heat of formation + Delta-G solvation = -36.376338 kcal Electronic energy + Delta-G solvation = -9132.019878 eV Core-core repulsion = 7226.572814 eV Total energy + Delta-G solvation = -1905.447064 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 185.025 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -40.09249 -37.16360 -34.29316 -32.16342 -29.03954 -26.25361 -23.82098 -20.55001 -19.27755 -18.64864 -17.17330 -16.67719 -15.55878 -15.00281 -14.92149 -14.46938 -13.98094 -13.35380 -12.97178 -12.81367 -12.30307 -12.10682 -11.87511 -11.15786 -10.76610 -10.47645 -10.31194 -9.37315 -8.14143 -6.40932 -0.15222 0.71116 0.97722 1.41668 1.43421 1.53312 1.65218 2.41011 3.11148 3.96398 4.20369 4.31991 4.55187 4.84644 5.00850 5.46586 5.65565 5.84298 6.02336 6.68502 7.30620 7.48412 8.88850 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.065139 B = 0.012159 C = 0.011483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.746772 B = 2302.317759 C = 2437.855995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.032 3.968 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.574 4.574 8 H 0.055 0.945 9 C 0.289 3.711 10 H 0.042 0.958 11 O -0.573 6.573 12 C -0.182 4.182 13 C 0.096 3.904 14 N -0.491 5.491 15 S 0.252 5.748 16 C -0.195 4.195 17 H 0.264 0.736 18 H 0.359 0.641 19 H 0.190 0.810 20 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.898 -5.483 -2.380 8.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.171 4.171 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.612 4.612 8 H 0.073 0.927 9 C 0.228 3.772 10 H 0.060 0.940 11 O -0.378 6.378 12 C -0.198 4.198 13 C -0.102 4.102 14 N -0.312 5.312 15 S 0.404 5.596 16 C -0.343 4.343 17 H 0.073 0.927 18 H 0.204 0.796 19 H 0.207 0.793 20 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 6.696 -7.152 -1.793 9.960 hybrid contribution -0.630 2.469 -0.186 2.555 sum 6.066 -4.683 -1.979 7.915 Atomic orbital electron populations 1.70182 1.07493 1.27633 1.47967 1.25823 0.95434 1.02586 0.93263 0.85571 0.78622 0.78980 0.78482 1.19723 1.20825 1.19344 1.21822 0.93172 0.91668 1.54509 0.92662 1.17827 0.85971 0.87647 0.85743 0.94037 1.86551 1.38821 1.96307 1.16072 1.21387 1.04011 1.01840 0.92591 1.22877 0.94750 0.91350 1.01190 1.76635 1.19547 1.23369 1.11612 1.83367 1.43672 1.30393 1.02152 1.26454 1.01336 1.02396 1.04153 0.92714 0.79557 0.79291 0.78620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.29 12.84 21.45 0.28 -51.01 14 2 C 0.03 1.72 5.40 84.66 0.46 2.18 14 3 Si 0.96 41.86 29.54 68.60 2.03 43.89 14 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 14 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 14 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 14 7 C -0.57 -30.10 8.75 25.60 0.22 -29.87 14 8 H 0.06 2.87 7.74 -2.91 -0.02 2.85 14 9 C 0.29 14.11 3.16 29.10 0.09 14.20 14 10 H 0.04 2.24 8.09 -2.39 -0.02 2.22 14 11 O -0.57 -28.29 12.61 -148.98 -1.88 -30.17 14 12 C -0.18 -7.32 4.84 -20.68 -0.10 -7.42 14 13 C 0.10 3.60 11.04 84.85 0.94 4.53 14 14 N -0.49 -17.57 12.09 -62.60 -0.76 -18.33 14 15 S 0.25 7.66 23.72 -56.49 -1.34 6.32 14 16 C -0.20 -6.63 10.59 67.11 0.71 -5.92 14 17 H 0.26 14.29 8.31 -92.71 -0.77 13.52 14 18 H 0.36 15.13 7.98 -74.06 -0.59 14.54 14 19 H 0.19 6.39 8.06 -2.91 -0.02 6.37 14 20 H 0.20 5.69 7.45 -2.91 -0.02 5.67 14 Total: -1.00 -60.80 203.49 1.32 -59.48 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.67 Total: 12.13 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 2.32 Total: -22.30 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -0.48 Total: -69.34 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -1.88 Total: -30.17 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 7.66 SS G_CDS: -1.34 Total: 6.32 kcal Total: -60.80 1.32 -59.48 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606244951.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.106 kcal (2) G-P(sol) polarization free energy of solvation -60.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds