Wall clock time and date at job start Mon Mar 30 2020 02:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99694 * 2 1 4 4 H 1.48502 * 109.47000 * 269.99824 * 3 2 1 5 5 H 1.48502 * 109.47306 * 29.99673 * 3 2 1 6 6 H 1.48501 * 109.47411 * 149.99941 * 3 2 1 7 7 C 1.37873 * 120.00615 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99595 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00534 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47332 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47020 * 179.97438 * 10 9 7 12 12 O 1.46303 * 110.99683 * 179.97438 * 11 10 9 13 13 C 1.42905 * 113.99805 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46974 * 180.02562 * 13 12 11 15 15 C 1.52997 * 117.49558 * 243.62071 * 14 13 12 16 16 C 1.52996 * 117.49401 * 174.99949 * 14 13 12 17 17 H 0.97001 * 120.00228 * 0.02562 * 1 2 3 18 18 H 1.08995 * 109.47766 * 59.99216 * 9 7 2 19 19 H 1.09008 * 109.46651 * 299.99865 * 9 7 2 20 20 H 1.09002 * 109.47142 * 59.99917 * 10 9 7 21 21 H 1.09000 * 109.46991 * 299.99661 * 10 9 7 22 22 H 1.00896 * 111.00309 * 56.04370 * 11 10 9 23 23 H 1.09007 * 109.46796 * 300.00268 * 13 12 11 24 24 H 1.08993 * 109.46964 * 59.99558 * 13 12 11 25 25 H 1.09000 * 115.54855 * 29.32906 * 14 13 12 26 26 H 1.09003 * 117.50219 * 0.02562 * 15 14 13 27 27 H 1.08996 * 117.49941 * 145.02533 * 15 14 13 28 28 H 1.09005 * 117.49418 * 214.97833 * 16 14 13 29 29 H 1.08996 * 117.50557 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 7 5.4907 -2.6363 0.0022 12 8 6.0150 -4.0021 0.0039 13 6 7.4421 -4.0768 0.0046 14 6 7.8760 -5.5440 0.0057 15 6 8.6540 -6.0496 1.2222 16 6 9.3728 -5.8381 -0.1118 17 1 -0.4850 0.8400 -0.0004 18 1 3.8747 -0.6798 0.8910 19 1 3.8752 -0.6802 -0.8889 20 1 3.6587 -3.1508 -0.8875 21 1 3.6580 -3.1496 0.8925 22 1 5.8523 -2.1095 0.7831 23 1 7.8321 -3.5836 -0.8859 24 1 7.8314 -3.5817 0.8941 25 1 7.1873 -6.2383 -0.4758 26 1 8.8565 -5.3371 2.0219 27 1 8.4773 -7.0767 1.5413 28 1 9.6689 -6.7261 -0.6703 29 1 10.0485 -4.9864 -0.1903 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688462064.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:06 Heat of formation + Delta-G solvation = -7.466783 kcal Electronic energy + Delta-G solvation = -10741.525256 eV Core-core repulsion = 8666.245122 eV Total energy + Delta-G solvation = -2075.280134 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.94559 -37.43698 -35.78929 -34.04026 -30.58302 -27.52760 -25.51569 -23.26255 -22.47837 -21.49679 -19.06977 -18.17448 -16.93851 -16.59578 -16.21529 -15.50613 -15.23566 -14.82804 -14.66080 -14.02085 -13.42831 -12.97276 -12.53296 -12.41980 -12.28553 -11.93249 -11.74357 -11.71092 -11.49771 -11.35122 -10.81744 -10.76111 -9.68538 -8.31701 -6.38549 1.39026 1.40432 1.52412 1.65421 2.35992 2.85963 3.03292 3.74521 3.92770 3.98651 4.16948 4.28635 4.35808 4.56849 4.61395 4.73694 4.76662 4.80157 4.99799 5.09385 5.23658 5.27181 5.33037 5.53653 5.71058 6.20332 6.34232 6.68809 7.26054 8.84779 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.103011 B = 0.006084 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 271.751421 B = 4601.084170 C = 4775.394420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.242 1.242 7 C -0.539 4.539 8 H 0.032 0.968 9 C 0.004 3.996 10 C 0.077 3.923 11 N -0.505 5.505 12 O -0.278 6.278 13 C 0.088 3.912 14 C -0.175 4.175 15 C -0.177 4.177 16 C -0.154 4.154 17 H 0.269 0.731 18 H 0.030 0.970 19 H 0.031 0.969 20 H 0.064 0.936 21 H 0.028 0.972 22 H 0.340 0.660 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.190 -6.605 1.648 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.577 4.577 8 H 0.050 0.950 9 C -0.035 4.035 10 C -0.052 4.052 11 N -0.176 5.176 12 O -0.286 6.286 13 C 0.011 3.989 14 C -0.195 4.195 15 C -0.214 4.214 16 C -0.191 4.191 17 H 0.078 0.922 18 H 0.049 0.951 19 H 0.050 0.950 20 H 0.082 0.918 21 H 0.046 0.954 22 H 0.156 0.844 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.130 0.870 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 18.970 -6.627 0.960 20.117 hybrid contribution -0.542 0.441 0.924 1.158 sum 18.428 -6.187 1.884 19.529 Atomic orbital electron populations 1.70059 1.08395 1.28460 1.51931 1.26019 0.95690 1.03700 0.93670 0.85560 0.79495 0.77615 0.79356 1.19092 1.20854 1.16552 1.21270 0.91364 0.93496 1.51592 0.94966 1.19356 0.94029 0.92292 0.97784 1.21900 0.84070 0.98887 1.00355 1.66761 1.08823 0.95591 1.46438 1.90745 1.22401 1.18238 1.97232 1.22083 0.80389 0.95514 1.00921 1.22104 0.96271 0.95588 1.05489 1.23184 1.03355 1.03054 0.91765 1.23084 0.91990 1.04217 0.99806 0.92236 0.95146 0.95034 0.91761 0.95358 0.84387 0.92202 0.92332 0.88070 0.88222 0.87843 0.87032 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.63 13.96 21.45 0.30 -59.33 15 2 C 0.01 0.38 5.47 84.65 0.46 0.85 15 3 Si 0.96 43.75 27.47 68.60 1.88 45.64 15 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 15 6 H -0.24 -10.09 6.54 99.48 0.65 -9.44 15 7 C -0.54 -31.46 9.66 25.60 0.25 -31.22 15 8 H 0.03 2.08 7.99 -2.91 -0.02 2.05 15 9 C 0.00 0.17 4.30 29.85 0.13 0.30 15 10 C 0.08 3.29 6.16 86.30 0.53 3.83 15 11 N -0.51 -18.19 7.33 -186.71 -1.37 -19.56 15 12 O -0.28 -9.64 11.28 -50.17 -0.57 -10.20 15 13 C 0.09 2.24 6.67 71.98 0.48 2.72 15 14 C -0.17 -3.75 6.06 -10.80 -0.07 -3.81 15 15 C -0.18 -2.96 10.18 30.59 0.31 -2.65 15 16 C -0.15 -2.32 10.25 30.59 0.31 -2.00 15 17 H 0.27 15.65 8.31 -92.71 -0.77 14.88 15 18 H 0.03 1.35 7.20 -2.39 -0.02 1.34 15 19 H 0.03 1.45 7.57 -2.38 -0.02 1.43 15 20 H 0.06 2.89 8.14 -2.39 -0.02 2.87 15 21 H 0.03 1.23 8.14 -2.39 -0.02 1.21 15 22 H 0.34 10.61 8.92 -89.70 -0.80 9.81 15 23 H 0.06 1.49 8.14 -2.38 -0.02 1.47 15 24 H 0.06 1.31 7.88 -2.39 -0.02 1.29 15 25 H 0.10 2.39 8.14 -2.39 -0.02 2.37 15 26 H 0.10 1.57 8.03 -2.39 -0.02 1.55 15 27 H 0.10 1.54 8.14 -2.39 -0.02 1.52 15 28 H 0.11 1.37 8.14 -2.38 -0.02 1.35 15 29 H 0.11 1.38 8.14 -2.39 -0.02 1.36 15 Total: -1.00 -66.24 252.43 2.92 -63.32 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.26 Total: 12.12 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 2.41 Total: -31.99 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -1.07 Total: -78.89 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.57 Total: -10.20 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.64 kcal Total: -66.24 2.92 -63.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688462064.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.852 kcal (2) G-P(sol) polarization free energy of solvation -66.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds