Wall clock time and date at job start Mon Mar 30 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 114.00077 * 2 1 4 4 C 1.52999 * 115.55740 * 34.30900 * 3 2 1 5 5 C 1.52991 * 117.49629 * 248.61993 * 3 2 1 6 6 C 1.52998 * 60.00199 * 252.51170 * 5 3 2 7 7 H 1.09007 * 117.50102 * 252.49389 * 6 5 3 8 8 N 1.46898 * 117.49821 * 107.48867 * 6 5 3 9 9 C 1.46903 * 110.99849 * 136.39569 * 8 6 5 10 10 C 1.50694 * 109.47066 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 H 1.08997 * 109.47569 * 179.97438 * 1 2 3 19 19 H 1.09007 * 109.47399 * 300.00561 * 1 2 3 20 20 H 1.09006 * 109.46622 * 60.00103 * 1 2 3 21 21 H 1.09005 * 109.46892 * 205.68424 * 4 3 2 22 22 H 1.08994 * 109.47591 * 325.69038 * 4 3 2 23 23 H 1.09001 * 109.47398 * 85.69369 * 4 3 2 24 24 H 1.09000 * 117.49978 * 145.02436 * 5 3 2 25 25 H 1.09004 * 117.52228 * 359.97438 * 5 3 2 26 26 H 1.00895 * 110.99776 * 260.34873 * 8 6 5 27 27 H 1.09007 * 109.47052 * 59.99769 * 9 8 6 28 28 H 1.09003 * 109.46808 * 300.00462 * 9 8 6 29 29 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.2372 2.3723 0.7780 5 6 2.7495 1.7496 -1.2637 6 6 3.5374 1.3988 0.0000 7 1 3.9917 2.2202 0.5542 8 7 4.2939 0.1396 0.0001 9 6 5.6303 0.3283 0.5800 10 6 6.3751 -0.9816 0.5625 11 1 5.9028 -1.8661 0.1611 12 6 7.6592 -1.0513 1.0599 13 7 8.2342 0.0256 1.5491 14 14 8.5821 -2.6752 1.0388 15 1 8.3189 -3.4107 2.3017 16 1 8.1226 -3.4908 -0.1140 17 1 10.0386 -2.4151 0.9118 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8901 21 1 1.4656 3.3567 0.3696 22 1 0.1676 2.1819 0.6908 23 1 1.5278 2.3383 1.8280 24 1 2.6853 2.8018 -1.5409 25 1 2.7932 1.0461 -2.0952 26 1 3.7882 -0.5860 0.4857 27 1 5.5343 0.6784 1.6079 28 1 6.1794 1.0660 -0.0052 29 1 9.1374 -0.0235 1.8993 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694438730.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:28 Heat of formation + Delta-G solvation = -40.942177 kcal Electronic energy + Delta-G solvation = -11250.877777 eV Core-core repulsion = 9174.146041 eV Total energy + Delta-G solvation = -2076.731736 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.16368 -37.03263 -35.32694 -33.45295 -29.70409 -28.08562 -27.34518 -23.99190 -22.14135 -21.21685 -18.68443 -17.46561 -16.90818 -16.34694 -16.11607 -15.35525 -15.12746 -14.58167 -14.15789 -13.99910 -13.54592 -12.97735 -12.90042 -12.70114 -12.55668 -12.21231 -12.08603 -11.96514 -11.30550 -11.29444 -10.65906 -10.01604 -8.99087 -8.24248 -6.36025 1.40365 1.42755 1.54885 2.39395 2.52543 2.95249 3.08755 3.35841 3.84232 4.03192 4.31605 4.45550 4.52903 4.59367 4.73519 4.83706 4.86278 4.91661 4.97553 5.12900 5.18569 5.23355 5.60985 5.99973 6.32590 6.45202 6.71339 6.85450 7.34876 8.87544 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.067478 B = 0.008252 C = 0.007758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.848894 B = 3392.246900 C = 3608.116153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.377 6.377 3 C 0.034 3.966 4 C -0.138 4.138 5 C -0.177 4.177 6 C 0.012 3.988 7 H 0.093 0.907 8 N -0.659 5.659 9 C 0.211 3.789 10 C -0.540 4.540 11 H 0.061 0.939 12 C 0.003 3.997 13 N -0.933 5.933 14 Si 0.977 3.023 15 H -0.270 1.270 16 H -0.266 1.266 17 H -0.278 1.278 18 H 0.095 0.905 19 H 0.060 0.940 20 H 0.053 0.947 21 H 0.087 0.913 22 H 0.090 0.910 23 H 0.063 0.937 24 H 0.121 0.879 25 H 0.086 0.914 26 H 0.338 0.662 27 H -0.037 1.037 28 H 0.002 0.998 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.550 3.192 -1.891 15.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.295 6.295 3 C -0.007 4.007 4 C -0.195 4.195 5 C -0.216 4.216 6 C -0.099 4.099 7 H 0.111 0.889 8 N -0.289 5.289 9 C 0.083 3.917 10 C -0.578 4.578 11 H 0.079 0.921 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.800 3.200 15 H -0.195 1.195 16 H -0.190 1.190 17 H -0.204 1.204 18 H 0.114 0.886 19 H 0.079 0.921 20 H 0.071 0.929 21 H 0.106 0.894 22 H 0.108 0.892 23 H 0.082 0.918 24 H 0.139 0.861 25 H 0.105 0.895 26 H 0.157 0.843 27 H -0.020 1.020 28 H 0.020 0.980 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.061 3.147 -2.457 14.617 hybrid contribution 0.487 -0.347 0.952 1.124 sum -13.574 2.800 -1.505 13.941 Atomic orbital electron populations 1.23015 0.79361 1.03733 1.01213 1.87885 1.21795 1.25347 1.94506 1.22408 0.91941 0.85795 1.00568 1.21828 1.00876 0.97022 0.99747 1.23885 1.02757 1.02425 0.92488 1.22970 0.90124 0.94588 1.02250 0.88894 1.60136 1.03521 1.06122 1.59107 1.19260 0.85705 0.96282 0.90406 1.21522 0.99963 0.95943 1.40414 0.92091 1.25972 0.98287 1.00925 0.94377 1.70089 1.15005 1.30467 1.41747 0.85278 0.77263 0.78503 0.78908 1.19499 1.19034 1.20353 0.88631 0.92144 0.92858 0.89448 0.89156 0.91817 0.86065 0.89507 0.84333 1.01974 0.98007 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.05 113.37 1.14 1.61 15 2 O -0.38 -12.19 10.16 -148.98 -1.51 -13.71 15 3 C 0.03 1.04 3.01 -10.80 -0.03 1.01 15 4 C -0.14 -2.99 9.49 71.98 0.68 -2.30 15 5 C -0.18 -5.60 10.05 30.59 0.31 -5.29 15 6 C 0.01 0.47 5.98 44.91 0.27 0.74 15 7 H 0.09 3.66 7.90 -2.38 -0.02 3.64 15 8 N -0.66 -31.91 6.67 -495.57 -3.30 -35.21 15 9 C 0.21 12.10 5.29 85.55 0.45 12.55 15 10 C -0.54 -32.56 9.32 25.60 0.24 -32.33 15 11 H 0.06 3.61 7.81 -2.91 -0.02 3.59 15 12 C 0.00 0.16 5.46 84.66 0.46 0.62 15 13 N -0.93 -57.77 13.29 21.45 0.28 -57.48 15 14 Si 0.98 45.61 29.54 68.60 2.03 47.63 15 15 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 16 H -0.27 -12.05 7.11 99.48 0.71 -11.35 15 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 18 H 0.10 1.77 8.14 -2.39 -0.02 1.75 15 19 H 0.06 1.06 6.47 -2.38 -0.02 1.05 15 20 H 0.05 0.98 8.14 -2.38 -0.02 0.96 15 21 H 0.09 1.60 7.90 -2.38 -0.02 1.58 15 22 H 0.09 1.53 5.78 -2.39 -0.01 1.51 15 23 H 0.06 1.43 8.14 -2.39 -0.02 1.41 15 24 H 0.12 3.04 8.05 -2.39 -0.02 3.02 15 25 H 0.09 2.99 8.14 -2.38 -0.02 2.97 15 26 H 0.34 16.33 8.05 -89.70 -0.72 15.61 15 27 H -0.04 -2.27 8.14 -2.38 -0.02 -2.29 15 28 H 0.00 0.11 8.14 -2.39 -0.02 0.09 15 29 H 0.27 15.36 8.31 -92.71 -0.77 14.59 15 Total: -1.00 -68.61 248.73 1.42 -67.20 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.40 Total: 14.96 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 3.52 Total: -23.39 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -3.02 Total: -92.69 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -1.51 Total: -13.71 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -68.61 1.42 -67.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694438730.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.253 kcal (2) G-P(sol) polarization free energy of solvation -68.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds