Wall clock time and date at job start Mon Mar 30 2020 02:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99905 * 2 1 4 4 H 1.48501 * 109.46978 * 270.00026 * 3 2 1 5 5 H 1.48504 * 109.47035 * 29.99752 * 3 2 1 6 6 H 1.48500 * 109.47159 * 149.99916 * 3 2 1 7 7 C 1.37871 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00084 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99987 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.46998 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99950 * 180.02562 * 10 9 7 12 12 C 1.53787 * 113.61627 * 205.00092 * 11 10 9 13 13 C 1.53778 * 87.08020 * 219.93342 * 12 11 10 14 14 C 1.52999 * 113.61256 * 139.98118 * 13 12 11 15 15 O 1.42903 * 109.47256 * 176.53062 * 14 13 12 16 16 C 1.53778 * 87.17519 * 25.38811 * 13 12 11 17 17 H 0.97003 * 119.99979 * 0.02562 * 1 2 3 18 18 H 1.09002 * 109.47356 * 59.99907 * 9 7 2 19 19 H 1.09000 * 109.47181 * 300.00413 * 9 7 2 20 20 H 1.00897 * 111.00443 * 303.95072 * 10 9 7 21 21 H 1.09000 * 112.84928 * 336.19299 * 11 10 9 22 22 H 1.08995 * 113.61122 * 105.38319 * 12 11 10 23 23 H 1.08998 * 113.60857 * 334.48072 * 12 11 10 24 24 H 1.09000 * 113.61408 * 270.80005 * 13 12 11 25 25 H 1.08997 * 109.47286 * 56.52622 * 14 13 12 26 26 H 1.09008 * 109.47201 * 296.52402 * 14 13 12 27 27 H 0.96700 * 114.00311 * 180.02562 * 15 14 13 28 28 H 1.09001 * 113.61340 * 89.16095 * 16 13 12 29 29 H 1.08998 * 113.61572 * 220.06032 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6156 0.0018 11 6 1.5053 -4.9070 0.0012 12 6 2.3336 -6.0572 0.5978 13 6 1.7687 -6.9421 -0.5258 14 6 2.7972 -7.9037 -1.1244 15 8 2.1622 -8.7347 -2.0982 16 6 1.5818 -5.6531 -1.3433 17 1 -0.4850 0.8401 -0.0004 18 1 0.6247 -2.5571 -0.8897 19 1 0.6240 -2.5566 0.8902 20 1 2.8411 -3.5490 -0.7791 21 1 0.4953 -4.8409 0.4055 22 1 2.0098 -6.3571 1.5944 23 1 3.4101 -5.9005 0.5307 24 1 0.8313 -7.4335 -0.2651 25 1 3.2162 -8.5259 -0.3335 26 1 3.5954 -7.3328 -1.5989 27 1 2.7560 -9.3710 -2.5197 28 1 2.4524 -5.3857 -1.9421 29 1 0.6520 -5.6273 -1.9115 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698982072.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:14 Heat of formation + Delta-G solvation = -66.279249 kcal Electronic energy + Delta-G solvation = -11082.828312 eV Core-core repulsion = 9004.997878 eV Total energy + Delta-G solvation = -2077.830434 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.33884 -37.38472 -35.76443 -33.80483 -29.35204 -27.51522 -26.55541 -24.03010 -22.28130 -20.57544 -18.52050 -18.13555 -16.90165 -16.51260 -16.16661 -15.65824 -14.77766 -14.62803 -14.39445 -13.49466 -13.33601 -13.07710 -12.89769 -12.69403 -12.51212 -12.22458 -11.72318 -11.49904 -11.41314 -11.08638 -10.71489 -10.66637 -9.03400 -8.23153 -6.35213 1.40791 1.42960 1.54858 2.39757 3.09744 3.23569 3.64338 3.69885 3.77084 4.10820 4.19044 4.46565 4.50717 4.69734 4.82686 4.83358 4.91121 5.06207 5.11438 5.21689 5.36262 5.47715 5.63983 6.02062 6.47792 6.72798 6.89870 6.95975 7.36163 8.88476 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.099350 B = 0.006866 C = 0.006799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 281.763298 B = 4077.195410 C = 4117.501036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.207 3.793 10 N -0.676 5.676 11 C 0.048 3.952 12 C -0.105 4.105 13 C -0.102 4.102 14 C 0.090 3.910 15 O -0.596 6.596 16 C -0.156 4.156 17 H 0.265 0.735 18 H -0.041 1.041 19 H -0.003 1.003 20 H 0.336 0.664 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.396 0.604 28 H 0.085 0.915 29 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.582 -13.631 -2.161 15.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.080 3.920 10 N -0.305 5.305 11 C -0.063 4.063 12 C -0.143 4.143 13 C -0.121 4.121 14 C 0.013 3.987 15 O -0.404 6.404 16 C -0.195 4.195 17 H 0.074 0.926 18 H -0.024 1.024 19 H 0.015 0.985 20 H 0.154 0.846 21 H 0.088 0.912 22 H 0.094 0.906 23 H 0.111 0.889 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.246 0.754 28 H 0.104 0.896 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.004 -13.141 -1.285 14.505 hybrid contribution -0.038 0.649 -1.062 1.245 sum 5.966 -12.492 -2.347 14.041 Atomic orbital electron populations 1.70103 1.07913 1.28049 1.51502 1.26010 0.95822 1.03578 0.94512 0.85284 0.78481 0.77709 0.78515 1.19614 1.20692 1.18734 1.21580 0.93883 0.91460 1.50673 0.91590 1.19225 0.90748 0.89150 0.92923 1.60517 1.19843 1.01255 1.48896 1.23147 0.97186 0.89115 0.96809 1.22976 1.00627 0.93005 0.97703 1.22315 0.99826 0.93399 0.96516 1.22164 0.93747 0.91977 0.90837 1.86453 1.42151 1.53708 1.58103 1.23717 1.01621 0.97201 0.96966 0.92596 1.02365 0.98471 0.84559 0.91154 0.90631 0.88881 0.89207 0.91651 0.92804 0.75440 0.89615 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.73 13.29 21.45 0.28 -57.44 15 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 15 3 Si 0.98 44.82 29.54 68.60 2.03 46.84 15 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 15 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 6 H -0.26 -11.58 7.11 99.48 0.71 -10.88 15 7 C -0.54 -31.41 9.32 25.60 0.24 -31.17 15 8 H 0.07 3.71 7.81 -2.91 -0.02 3.69 15 9 C 0.21 11.53 5.28 85.56 0.45 11.98 15 10 N -0.68 -29.94 6.61 -492.54 -3.26 -33.20 15 11 C 0.05 1.77 4.18 45.50 0.19 1.96 15 12 C -0.10 -2.91 7.44 31.12 0.23 -2.68 15 13 C -0.10 -2.62 4.00 -10.27 -0.04 -2.66 15 14 C 0.09 1.83 6.87 71.98 0.49 2.33 15 15 O -0.60 -12.62 13.66 -148.98 -2.04 -14.66 15 16 C -0.16 -4.89 7.26 31.18 0.23 -4.66 15 17 H 0.27 15.29 8.31 -92.71 -0.77 14.52 15 18 H -0.04 -2.48 8.14 -2.39 -0.02 -2.50 15 19 H 0.00 -0.17 8.13 -2.39 -0.02 -0.19 15 20 H 0.34 14.02 8.20 -89.70 -0.74 13.29 15 21 H 0.07 2.81 7.87 -2.39 -0.02 2.79 15 22 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.09 2.43 8.10 -2.39 -0.02 2.41 15 24 H 0.09 2.37 8.14 -2.39 -0.02 2.35 15 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 15 26 H 0.05 1.02 7.88 -2.38 -0.02 1.00 15 27 H 0.40 4.27 9.12 -74.06 -0.68 3.60 15 28 H 0.09 2.56 7.61 -2.39 -0.02 2.54 15 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 15 Total: -1.00 -67.80 247.96 -1.00 -68.80 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -0.27 Total: 14.16 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: 2.25 Total: -24.51 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -2.97 Total: -90.64 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -2.04 Total: -14.66 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -67.80 -1.00 -68.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698982072.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.521 kcal (2) G-P(sol) polarization free energy of solvation -67.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds