Wall clock time and date at job start Mon Mar 30 2020 02:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86798 * 119.99542 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99781 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99962 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.38630 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00197 * 180.02562 * 7 2 1 9 9 O 1.34923 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.42900 * 117.00305 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47122 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47128 * 179.97438 * 11 10 9 13 13 H 1.09002 * 110.36828 * 305.70446 * 12 11 10 14 14 C 1.54373 * 110.41634 * 183.35223 * 12 11 10 15 15 C 1.54255 * 105.06470 * 217.37137 * 14 12 11 16 16 C 1.54378 * 105.05828 * 359.97438 * 15 14 12 17 17 N 1.48560 * 110.41106 * 68.04680 * 12 11 10 18 18 H 0.97001 * 119.99415 * 179.97438 * 1 2 3 19 19 H 1.08994 * 109.46977 * 300.00041 * 10 9 7 20 20 H 1.08999 * 109.47254 * 59.99945 * 10 9 7 21 21 H 1.08994 * 109.47314 * 299.99939 * 11 10 9 22 22 H 1.08999 * 109.47015 * 59.99903 * 11 10 9 23 23 H 1.09004 * 110.31721 * 336.26582 * 14 12 11 24 24 H 1.09000 * 110.32507 * 98.46401 * 14 12 11 25 25 H 1.08992 * 110.32774 * 118.89203 * 15 14 12 26 26 H 1.09001 * 110.32279 * 241.10584 * 15 14 12 27 27 H 1.09004 * 110.41283 * 142.63486 * 16 15 14 28 28 H 1.08999 * 110.41667 * 264.95495 * 16 15 14 29 29 H 1.00900 * 111.00814 * 277.82399 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6965 -1.2125 5 1 3.1035 1.6966 1.2125 6 1 1.2847 2.7465 -0.0006 7 6 2.0090 -1.2005 -0.0005 8 1 3.0891 -1.2005 -0.0001 9 8 1.3345 -2.3691 -0.0005 10 6 2.1129 -3.5675 -0.0005 11 6 1.1809 -4.7809 0.0001 12 6 2.0142 -6.0641 -0.0005 13 1 2.7204 -6.0574 -0.8308 14 6 1.0962 -7.3023 -0.0845 15 6 1.7641 -8.3586 0.8197 16 6 3.0299 -7.6699 1.3735 17 7 2.7339 -6.2151 1.2903 18 1 -0.4849 -0.8401 -0.0004 19 1 2.7416 -3.5923 -0.8905 20 1 2.7417 -3.5924 0.8894 21 1 0.5524 -4.7559 0.8903 22 1 0.5517 -4.7563 -0.8896 23 1 0.1003 -7.0611 0.2871 24 1 1.0407 -7.6635 -1.1114 25 1 1.0962 -8.6359 1.6351 26 1 2.0366 -9.2383 0.2366 27 1 3.2010 -7.9646 2.4089 28 1 3.8966 -7.9176 0.7606 29 1 3.5833 -5.6706 1.2967 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703063753.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:24 Heat of formation + Delta-G solvation = -51.391095 kcal Electronic energy + Delta-G solvation = -11219.946088 eV Core-core repulsion = 9142.761253 eV Total energy + Delta-G solvation = -2077.184835 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.61100 -36.25828 -32.41827 -30.97596 -30.21379 -26.87344 -23.82355 -22.27499 -20.70298 -19.93868 -17.83697 -16.71472 -15.26229 -14.85467 -14.55660 -13.90071 -13.49580 -13.47379 -12.83328 -12.22068 -12.00450 -11.45757 -11.41913 -11.05041 -10.65934 -10.49218 -10.46628 -10.05878 -9.96137 -9.40602 -9.09430 -8.50866 -7.88189 -6.22555 -3.52959 3.43814 3.49234 3.66881 4.28412 4.47187 4.66900 4.80507 5.02971 5.15994 5.38479 5.50331 5.55851 5.66089 5.75141 5.82504 5.95162 5.97802 6.07534 6.24655 6.34988 6.54595 6.72524 6.81811 6.97689 7.38888 7.76127 8.91828 9.52654 10.18425 11.25791 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.099655 B = 0.007321 C = 0.006999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 280.901238 B = 3823.554169 C = 3999.465438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 1.091 2.909 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.447 4.447 8 H 0.050 0.950 9 O -0.322 6.322 10 C 0.084 3.916 11 C -0.102 4.102 12 C 0.071 3.929 13 H 0.047 0.953 14 C -0.121 4.121 15 C -0.124 4.124 16 C 0.034 3.966 17 N -0.661 5.661 18 H 0.275 0.725 19 H 0.015 0.985 20 H 0.025 0.975 21 H 0.074 0.926 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.036 0.964 29 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.362 -14.099 0.333 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.919 3.081 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.526 4.526 8 H 0.068 0.932 9 O -0.238 6.238 10 C 0.006 3.994 11 C -0.140 4.140 12 C -0.039 4.039 13 H 0.065 0.935 14 C -0.159 4.159 15 C -0.162 4.162 16 C -0.096 4.096 17 N -0.291 5.291 18 H 0.085 0.915 19 H 0.033 0.967 20 H 0.043 0.957 21 H 0.092 0.908 22 H 0.085 0.915 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.400 -12.434 0.796 13.213 hybrid contribution 1.387 -1.928 -0.690 2.473 sum 5.787 -14.362 0.106 15.484 Atomic orbital electron populations 1.70563 1.06216 1.30695 1.47985 1.26063 0.97156 1.00370 0.97370 0.83165 0.74226 0.74493 0.76265 1.21644 1.21583 1.20310 1.21672 0.91161 0.84209 1.55522 0.93182 1.85305 1.33205 1.11317 1.93967 1.21986 0.93243 0.86613 0.97532 1.21443 0.98166 0.91578 1.02770 1.22440 0.95508 0.95409 0.90554 0.93531 1.22338 0.99752 0.94328 0.99452 1.22279 0.96943 0.97692 0.99290 1.22912 0.96433 0.89440 1.00773 1.63699 1.26063 1.05521 1.33775 0.91536 0.96707 0.95652 0.90775 0.91523 0.90693 0.91519 0.91147 0.91721 0.90435 0.94592 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -30.17 13.70 55.48 0.76 -29.41 15 2 C -0.01 -0.30 5.49 -17.51 -0.10 -0.40 15 3 Si 1.09 26.37 29.92 -169.99 -5.09 21.29 15 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 7 C -0.45 -13.92 9.89 30.88 0.31 -13.62 15 8 H 0.05 1.49 7.77 -52.48 -0.41 1.09 15 9 O -0.32 -9.69 9.18 -16.49 -0.15 -9.84 15 10 C 0.08 1.96 5.91 37.16 0.22 2.18 15 11 C -0.10 -1.93 5.18 -26.73 -0.14 -2.07 15 12 C 0.07 1.06 3.13 -66.07 -0.21 0.85 15 13 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 14 C -0.12 -1.51 6.55 -25.36 -0.17 -1.67 15 15 C -0.12 -1.34 7.00 -25.35 -0.18 -1.51 15 16 C 0.03 0.39 7.47 -2.11 -0.02 0.37 15 17 N -0.66 -9.61 7.02 -102.65 -0.72 -10.34 15 18 H 0.27 9.27 7.97 -40.82 -0.33 8.95 15 19 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 15 20 H 0.03 0.58 7.56 -51.93 -0.39 0.19 15 21 H 0.07 1.50 8.14 -51.93 -0.42 1.07 15 22 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 23 H 0.07 0.97 7.86 -51.93 -0.41 0.56 15 24 H 0.07 0.74 8.14 -51.93 -0.42 0.31 15 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 15 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 15 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 15 29 H 0.34 4.76 8.50 -39.29 -0.33 4.43 15 LS Contribution 244.71 15.07 3.69 3.69 Total: -1.00 -34.41 244.71 -6.25 -40.67 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.47 Total: -0.18 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -0.28 Total: -15.87 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.04 Total: -39.74 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.15 Total: -9.84 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -5.09 Total: 21.29 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -34.41 -6.25 -40.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703063753.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.725 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds