Wall clock time and date at job start Mon Mar 30 2020 02:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47330 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99813 * 179.97438 * 10 9 7 12 12 H 1.08994 * 112.85276 * 336.19241 * 11 10 9 13 13 C 1.53790 * 113.61097 * 107.50197 * 11 10 9 14 14 C 1.53786 * 87.07903 * 139.98011 * 13 11 10 15 15 H 1.08995 * 113.61646 * 89.11500 * 14 13 11 16 16 C 1.53004 * 113.61125 * 220.01997 * 14 13 11 17 17 O 1.42904 * 109.46848 * 272.49483 * 16 14 13 18 18 C 1.53778 * 113.61176 * 204.99293 * 11 10 9 19 19 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 21 21 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 22 22 H 1.00903 * 110.99772 * 56.04070 * 10 9 7 23 23 H 1.08999 * 113.60952 * 254.52358 * 13 11 10 24 24 H 1.08998 * 113.61657 * 25.43182 * 13 11 10 25 25 H 1.09000 * 109.47119 * 32.49103 * 16 14 13 26 26 H 1.08995 * 109.47149 * 152.49382 * 16 14 13 27 27 H 0.96701 * 113.99860 * 180.02562 * 17 16 14 28 28 H 1.09001 * 113.61699 * 334.57512 * 18 11 10 29 29 H 1.09001 * 113.61238 * 105.38872 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 1.5050 -4.9071 0.0001 12 1 0.4956 -4.8409 0.4058 13 6 1.5834 -5.6510 -1.3436 14 6 1.7692 -6.9417 -0.5285 15 1 0.8315 -7.4326 -0.2684 16 6 2.7981 -7.9024 -1.1282 17 8 2.1558 -8.7570 -2.0765 18 6 2.3341 -6.0572 0.5955 19 1 -0.4850 0.8401 0.0004 20 1 0.6246 -2.5570 0.8898 21 1 0.6239 -2.5567 -0.8903 22 1 2.8404 -3.5487 0.7808 23 1 0.6540 -5.6238 -1.9125 24 1 2.4546 -5.3826 -1.9411 25 1 3.5816 -7.3312 -1.6261 26 1 3.2374 -8.5061 -0.3341 27 1 2.7494 -9.3940 -2.4972 28 1 3.4106 -5.8999 0.5281 29 1 2.0118 -6.3571 1.5926 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707592521.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:19 Heat of formation + Delta-G solvation = -66.082871 kcal Electronic energy + Delta-G solvation = -11075.194938 eV Core-core repulsion = 8997.373020 eV Total energy + Delta-G solvation = -2077.821918 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.28813 -37.36979 -35.79128 -33.83457 -29.35393 -27.56303 -26.57988 -24.01163 -22.20084 -20.46614 -18.55178 -18.13306 -16.87488 -16.62062 -16.20093 -15.46785 -15.27051 -14.57397 -14.30975 -13.51030 -13.29722 -13.09839 -12.89244 -12.62002 -12.32379 -12.18793 -11.75559 -11.55983 -11.27545 -11.09679 -10.69881 -10.66206 -9.12584 -8.23489 -6.35695 1.40565 1.44880 1.52904 2.39585 3.09414 3.26927 3.56225 3.68182 3.94675 4.03046 4.13823 4.47711 4.52485 4.72011 4.81396 4.85854 4.93886 5.06215 5.12220 5.19649 5.39157 5.48631 5.65322 6.02684 6.46602 6.73521 6.89817 6.97690 7.35701 8.88182 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.099185 B = 0.006856 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 282.233578 B = 4082.796947 C = 4122.574269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.977 3.023 4 H -0.283 1.283 5 H -0.264 1.264 6 H -0.268 1.268 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.208 3.792 10 N -0.675 5.675 11 C 0.040 3.960 12 H 0.046 0.954 13 C -0.120 4.120 14 C -0.102 4.102 15 H 0.090 0.910 16 C 0.091 3.909 17 O -0.596 6.596 18 C -0.114 4.114 19 H 0.265 0.735 20 H -0.041 1.041 21 H -0.006 1.006 22 H 0.337 0.663 23 H 0.045 0.955 24 H 0.081 0.919 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.396 0.604 28 H 0.099 0.901 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.804 -13.744 -0.058 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.801 3.199 4 H -0.208 1.208 5 H -0.188 1.188 6 H -0.193 1.193 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.080 3.920 10 N -0.305 5.305 11 C -0.071 4.071 12 H 0.064 0.936 13 C -0.158 4.158 14 C -0.121 4.121 15 H 0.109 0.891 16 C 0.014 3.986 17 O -0.404 6.404 18 C -0.152 4.152 19 H 0.074 0.926 20 H -0.023 1.023 21 H 0.012 0.988 22 H 0.155 0.845 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.246 0.754 28 H 0.118 0.882 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.221 -13.270 -0.559 14.666 hybrid contribution -0.074 0.711 0.638 0.958 sum 6.147 -12.559 0.079 13.983 Atomic orbital electron populations 1.70102 1.07961 1.28131 1.51429 1.26028 0.95824 1.03629 0.94474 0.85324 0.78047 0.77293 0.79255 1.20797 1.18838 1.19277 1.21551 0.93902 0.91411 1.50803 0.91498 1.19229 0.90738 0.89248 0.92808 1.60689 1.19957 1.01141 1.48721 1.23106 0.96437 0.89105 0.98404 0.93579 1.23093 1.01313 0.95144 0.96258 1.22305 0.99782 0.93492 0.96497 0.89136 1.22157 0.93624 0.91522 0.91335 1.86454 1.41654 1.52493 1.59807 1.23106 1.00672 0.93463 0.97974 0.92585 1.02326 0.98784 0.84532 0.93591 0.89999 0.92926 0.91490 0.75432 0.88221 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.03 13.29 21.45 0.28 -57.75 15 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 15 3 Si 0.98 44.87 29.54 68.60 2.03 46.90 15 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 5 H -0.26 -11.48 7.11 99.48 0.71 -10.78 15 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 7 C -0.54 -31.54 9.32 25.60 0.24 -31.31 15 8 H 0.07 3.76 7.81 -2.91 -0.02 3.73 15 9 C 0.21 11.63 5.28 85.55 0.45 12.09 15 10 N -0.67 -30.00 6.55 -492.85 -3.23 -33.23 15 11 C 0.04 1.48 4.14 45.44 0.19 1.66 15 12 H 0.05 1.86 7.86 -2.39 -0.02 1.84 15 13 C -0.12 -4.02 7.43 31.13 0.23 -3.79 15 14 C -0.10 -2.67 4.01 -10.26 -0.04 -2.71 15 15 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 16 C 0.09 1.89 6.88 71.98 0.50 2.38 15 17 O -0.60 -12.91 13.66 -148.98 -2.04 -14.94 15 18 C -0.11 -3.03 7.21 31.12 0.22 -2.80 15 19 H 0.27 15.40 8.31 -92.70 -0.77 14.63 15 20 H -0.04 -2.45 8.13 -2.38 -0.02 -2.47 15 21 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 15 22 H 0.34 13.87 8.54 -89.69 -0.77 13.10 15 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 15 24 H 0.08 2.81 7.90 -2.39 -0.02 2.79 15 25 H 0.05 1.06 7.84 -2.39 -0.02 1.04 15 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 15 27 H 0.40 4.43 9.12 -74.06 -0.68 3.76 15 28 H 0.10 2.41 8.10 -2.39 -0.02 2.39 15 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 15 Total: -1.00 -68.66 248.41 -1.01 -69.67 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -0.31 Total: 13.45 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 2.25 Total: -24.10 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -2.94 Total: -90.98 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -2.04 Total: -14.94 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -68.66 -1.01 -69.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707592521.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.586 kcal (2) G-P(sol) polarization free energy of solvation -68.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds